[DATALAD RUNCMD] Compute Trinity/sub-0050246

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050246/anat/sub-0050246_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050246"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050246/label/catROI_sub-0050246_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/84/8m/MD5E-s61366--b7de4d8bbdd8c647026b06a46796165b.mat/MD5E-s61366--b7de4d8bbdd8c647026b06a46796165b.mat

Trinity/sub-0050246/label/catROI_sub-0050246_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zp/Ww/MD5E-s188499--a2151c1ad9f8f375ba39849573673ccf.xml/MD5E-s188499--a2151c1ad9f8f375ba39849573673ccf.xml

Trinity/sub-0050246/label/catROIs_sub-0050246_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kx/zJ/MD5E-s120081--bfb0d18325c096c995f0d3e18149836b.mat/MD5E-s120081--bfb0d18325c096c995f0d3e18149836b.mat

Trinity/sub-0050246/label/catROIs_sub-0050246_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mj/fZ/MD5E-s332157--451e72f91e1d3583d12d604b1c5c6812.xml/MD5E-s332157--451e72f91e1d3583d12d604b1c5c6812.xml

Trinity/sub-0050246/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050246/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/GX/MD5E-s189531--97900da58bfca11fcbed6d2d3d99545d.nii.gz/MD5E-s189531--97900da58bfca11fcbed6d2d3d99545d.nii.gz

Trinity/sub-0050246/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050246/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GM/5X/MD5E-s214985--8b22e0cb181a6ad6008d64b64b7761ad.nii.gz/MD5E-s214985--8b22e0cb181a6ad6008d64b64b7761ad.nii.gz

Trinity/sub-0050246/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050246/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QW/K4/MD5E-s286816--1d379e5bed062044e4dcdc1412076178.nii.gz/MD5E-s286816--1d379e5bed062044e4dcdc1412076178.nii.gz

Trinity/sub-0050246/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050246/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/74/MD5E-s320316--aba2007c07507af2a8c795ab73aa2d92.nii.gz/MD5E-s320316--aba2007c07507af2a8c795ab73aa2d92.nii.gz

Trinity/sub-0050246/mri/Tian_Subcortex_S2_7T_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050246/mri/Tian_Subcortex_S2_7T_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jg/M6/MD5E-s25411--819196c92d4b1ca2b37d8ef0151896fb.nii.gz/MD5E-s25411--819196c92d4b1ca2b37d8ef0151896fb.nii.gz

Trinity/sub-0050246/mri/aal3_sub-0050246_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050246/mri/aal3_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050246/mri/anatomy3_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/anatomy3_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gp/K9/MD5E-s154878--ec20a45cb7c524ef52c70f3c348eaed5.nii.gz/MD5E-s154878--ec20a45cb7c524ef52c70f3c348eaed5.nii.gz

Trinity/sub-0050246/mri/anon_misub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050246/mri/anon_msub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/jm/MD5E-s9679772--3a650877f5dbaf155d338139943ae1fa.nii.gz/MD5E-s9679772--3a650877f5dbaf155d338139943ae1fa.nii.gz

Trinity/sub-0050246/mri/cat_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/5p/MD5E-s114059--aff866c74c8e5974395ca5da5a3a60b6.nii.gz/MD5E-s114059--aff866c74c8e5974395ca5da5a3a60b6.nii.gz

Trinity/sub-0050246/mri/cobra_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050246/mri/cobra_sub-0050246_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/42/g1/MD5E-s52365--7db2aa08b2ac5e803e76b8b34493ab65.nii.gz/MD5E-s52365--7db2aa08b2ac5e803e76b8b34493ab65.nii.gz

Trinity/sub-0050246/mri/hammers_sub-0050246_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050246/mri/hammers_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/ibsr_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/ibsr_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/it_sub-0050246_T1w_affine_reorient.mat

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Trinity/sub-0050246/mri/it_sub-0050246_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/fk/MD5E-s283--a0ff93e596346d2140ad247009ac9bd8.mat/MD5E-s283--a0ff93e596346d2140ad247009ac9bd8.mat

Trinity/sub-0050246/mri/iy_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/julichbrain_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/julichbrain_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/lpba40_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/lpba40_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/m0wp1sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/m0wp2sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/m0wp3sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/mori_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/mori_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/mwp1sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/mwp2sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/mwp3sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/neuromorphometrics_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/neuromorphometrics_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/p0sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/p1sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/p2sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/p3sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/rp1sub-0050246_T1w_affine.nii.gz

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Trinity/sub-0050246/mri/rp2sub-0050246_T1w_affine.nii.gz

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Trinity/sub-0050246/mri/rp3sub-0050246_T1w_affine.nii.gz

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Trinity/sub-0050246/mri/t_sub-0050246_T1w_affine_reorient.mat

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Trinity/sub-0050246/mri/t_sub-0050246_T1w_rigid_reorient.mat

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Trinity/sub-0050246/mri/thalamus_sub-0050246_T1w.csv

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Trinity/sub-0050246/mri/thalamus_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wj_sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wmisub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wmsub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wp0sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wp1sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wp2sub-0050246_T1w.nii.gz

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Trinity/sub-0050246/mri/wp3sub-0050246_T1w.nii.gz

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