[DATALAD RUNCMD] Compute Pitt/sub-0050055

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050055/anat/sub-0050055_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050055"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050055/label/catROI_sub-0050055_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/G6/5j/MD5E-s61243--d5fdf903482a803f5f33bec6dd000ca9.mat/MD5E-s61243--d5fdf903482a803f5f33bec6dd000ca9.mat

Pitt/sub-0050055/label/catROI_sub-0050055_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FV/J0/MD5E-s188895--a6a81f3bb431246b3099e04ef1642de2.xml/MD5E-s188895--a6a81f3bb431246b3099e04ef1642de2.xml

Pitt/sub-0050055/label/catROIs_sub-0050055_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J5/f8/MD5E-s120359--072fb00e8160da38ea16efb051b590d6.mat/MD5E-s120359--072fb00e8160da38ea16efb051b590d6.mat

Pitt/sub-0050055/label/catROIs_sub-0050055_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/KV/JM/MD5E-s332222--8021e8402f40f4125f295754846ae582.xml/MD5E-s332222--8021e8402f40f4125f295754846ae582.xml

Pitt/sub-0050055/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050055/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/fQ/MD5E-s144850--61c10eaa5d0b939593b56e945299ddbb.nii.gz/MD5E-s144850--61c10eaa5d0b939593b56e945299ddbb.nii.gz

Pitt/sub-0050055/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050055/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PZ/9m/MD5E-s164293--4b2d90d8e3df881535d7bbf22d980a9a.nii.gz/MD5E-s164293--4b2d90d8e3df881535d7bbf22d980a9a.nii.gz

Pitt/sub-0050055/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050055/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3w/FM/MD5E-s221078--ac3314334eeced0466dd7b0aa9c65cfa.nii.gz/MD5E-s221078--ac3314334eeced0466dd7b0aa9c65cfa.nii.gz

Pitt/sub-0050055/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050055/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/q8/MD5E-s246877--f8f5f0b24f20333240c704b2dfebedc4.nii.gz/MD5E-s246877--f8f5f0b24f20333240c704b2dfebedc4.nii.gz

Pitt/sub-0050055/mri/Tian_Subcortex_S2_7T_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050055/mri/Tian_Subcortex_S2_7T_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z5/Xp/MD5E-s23471--0f286f12ec62b954a0e56d7278721b70.nii.gz/MD5E-s23471--0f286f12ec62b954a0e56d7278721b70.nii.gz

Pitt/sub-0050055/mri/aal3_sub-0050055_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050055/mri/aal3_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/anatomy3_sub-0050055_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050055/mri/anatomy3_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050055/mri/anon_misub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kw/zM/MD5E-s11164055--11c4f8937eb4f284682f7b268a65368b.nii.gz/MD5E-s11164055--11c4f8937eb4f284682f7b268a65368b.nii.gz

Pitt/sub-0050055/mri/anon_msub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/wP/MD5E-s10776984--724de83aa0dad97c57096ef71cc010e8.nii.gz/MD5E-s10776984--724de83aa0dad97c57096ef71cc010e8.nii.gz

Pitt/sub-0050055/mri/cat_sub-0050055_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/K4/MD5E-s86118--51ad0aa60cbdaebac8b4d5bcdee43b34.nii.gz/MD5E-s86118--51ad0aa60cbdaebac8b4d5bcdee43b34.nii.gz

Pitt/sub-0050055/mri/cobra_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050055/mri/cobra_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/hammers_sub-0050055_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050055/mri/hammers_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/ibsr_sub-0050055_T1w.csv

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Pitt/sub-0050055/mri/ibsr_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/it_sub-0050055_T1w_affine_reorient.mat

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Pitt/sub-0050055/mri/it_sub-0050055_T1w_rigid_reorient.mat

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Pitt/sub-0050055/mri/iy_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/julichbrain_sub-0050055_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050055/mri/julichbrain_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/lpba40_sub-0050055_T1w.csv

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Pitt/sub-0050055/mri/lpba40_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/m0wp1sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/m0wp2sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/m0wp3sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/mori_sub-0050055_T1w.csv

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Pitt/sub-0050055/mri/mori_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/mwp1sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/mwp2sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/mwp3sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/neuromorphometrics_sub-0050055_T1w.csv

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Pitt/sub-0050055/mri/neuromorphometrics_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/p0sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/p1sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/p2sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/p3sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/rp1sub-0050055_T1w_affine.nii.gz

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Pitt/sub-0050055/mri/rp2sub-0050055_T1w_affine.nii.gz

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Pitt/sub-0050055/mri/rp3sub-0050055_T1w_affine.nii.gz

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Pitt/sub-0050055/mri/t_sub-0050055_T1w_affine_reorient.mat

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Pitt/sub-0050055/mri/t_sub-0050055_T1w_rigid_reorient.mat

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Pitt/sub-0050055/mri/thalamus_sub-0050055_T1w.csv

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Pitt/sub-0050055/mri/thalamus_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wj_sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wmisub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wmsub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wp0sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wp1sub-0050055_T1w.nii.gz

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Pitt/sub-0050055/mri/wp2sub-0050055_T1w.nii.gz

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