[DATALAD RUNCMD] Compute Leuven_2/sub-0050730

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050730/anat/sub-0050730_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050730"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050730/label/catROI_sub-0050730_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/V1/MD5E-s61293--e0f6ebbbdeb76ede5e6555905796ac5b.mat/MD5E-s61293--e0f6ebbbdeb76ede5e6555905796ac5b.mat

Leuven_2/sub-0050730/label/catROI_sub-0050730_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/4j/MD5E-s188847--78dfb4ed4d4028b0865aab563b977845.xml/MD5E-s188847--78dfb4ed4d4028b0865aab563b977845.xml

Leuven_2/sub-0050730/label/catROIs_sub-0050730_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/k9/MD5E-s119960--2a532de9b389dbf26c9ecbe1308b7b2c.mat/MD5E-s119960--2a532de9b389dbf26c9ecbe1308b7b2c.mat

Leuven_2/sub-0050730/label/catROIs_sub-0050730_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/gq/MD5E-s332131--706503704d178930fc0d071597198ff5.xml/MD5E-s332131--706503704d178930fc0d071597198ff5.xml

Leuven_2/sub-0050730/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050730/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FG/FV/MD5E-s170486--3671576b1a429a1117b95102616160b7.nii.gz/MD5E-s170486--3671576b1a429a1117b95102616160b7.nii.gz

Leuven_2/sub-0050730/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050730/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/8p/MD5E-s190322--dc06bd5748d640c4e3ca1e8e88a50777.nii.gz/MD5E-s190322--dc06bd5748d640c4e3ca1e8e88a50777.nii.gz

Leuven_2/sub-0050730/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050730/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qk/09/MD5E-s242934--0bf61416430e4c8c04dd7779fd0d2779.nii.gz/MD5E-s242934--0bf61416430e4c8c04dd7779fd0d2779.nii.gz

Leuven_2/sub-0050730/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050730/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/4V/MD5E-s270020--5cecdbe3d21d2e5ad8ff1b2b2334991a.nii.gz/MD5E-s270020--5cecdbe3d21d2e5ad8ff1b2b2334991a.nii.gz

Leuven_2/sub-0050730/mri/Tian_Subcortex_S2_7T_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050730/mri/Tian_Subcortex_S2_7T_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZX/jG/MD5E-s24422--1ad1eecac4664464bf20f361515a6d32.nii.gz/MD5E-s24422--1ad1eecac4664464bf20f361515a6d32.nii.gz

Leuven_2/sub-0050730/mri/aal3_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050730/mri/aal3_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/anatomy3_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050730/mri/anatomy3_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050730/mri/anon_misub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050730/mri/anon_msub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/pg/MD5E-s12188956--7507ce45cf566211615c216d13d839bf.nii.gz/MD5E-s12188956--7507ce45cf566211615c216d13d839bf.nii.gz

Leuven_2/sub-0050730/mri/cat_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wQ/Wv/MD5E-s99431--c9c0a939c0c4373f7ad7711dfd338a9b.nii.gz/MD5E-s99431--c9c0a939c0c4373f7ad7711dfd338a9b.nii.gz

Leuven_2/sub-0050730/mri/cobra_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050730/mri/cobra_sub-0050730_T1w.nii.gz

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+../../../.git/annex/objects/ZJ/8Q/MD5E-s48165--4594d27e78a5e521fcc6c389b3dbc336.nii.gz/MD5E-s48165--4594d27e78a5e521fcc6c389b3dbc336.nii.gz

Leuven_2/sub-0050730/mri/hammers_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050730/mri/hammers_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/ibsr_sub-0050730_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050730/mri/ibsr_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/it_sub-0050730_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GJ/x4/MD5E-s284--a9f9f666713889dc9e7e971fef2e9cdc.mat/MD5E-s284--a9f9f666713889dc9e7e971fef2e9cdc.mat

Leuven_2/sub-0050730/mri/it_sub-0050730_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/37/MD5E-s282--048622367023e6ebdd614d0e22a32dca.mat/MD5E-s282--048622367023e6ebdd614d0e22a32dca.mat

Leuven_2/sub-0050730/mri/iy_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pm/21/MD5E-s38757800--dc0b6cf1faa76a718194cf9752d6aea6.nii.gz/MD5E-s38757800--dc0b6cf1faa76a718194cf9752d6aea6.nii.gz

Leuven_2/sub-0050730/mri/julichbrain_sub-0050730_T1w.csv

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Leuven_2/sub-0050730/mri/julichbrain_sub-0050730_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050730/mri/lpba40_sub-0050730_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050730/mri/lpba40_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/m0wp1sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/m0wp2sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/m0wp3sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/mori_sub-0050730_T1w.csv

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Leuven_2/sub-0050730/mri/mori_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/mwp1sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/mwp2sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/mwp3sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/neuromorphometrics_sub-0050730_T1w.csv

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Leuven_2/sub-0050730/mri/neuromorphometrics_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/p0sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/p1sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/p2sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/p3sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/rp1sub-0050730_T1w_affine.nii.gz

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Leuven_2/sub-0050730/mri/rp2sub-0050730_T1w_affine.nii.gz

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Leuven_2/sub-0050730/mri/rp3sub-0050730_T1w_affine.nii.gz

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Leuven_2/sub-0050730/mri/t_sub-0050730_T1w_affine_reorient.mat

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Leuven_2/sub-0050730/mri/t_sub-0050730_T1w_rigid_reorient.mat

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Leuven_2/sub-0050730/mri/thalamus_sub-0050730_T1w.csv

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Leuven_2/sub-0050730/mri/thalamus_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/wj_sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/wmisub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/wmsub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/wp0sub-0050730_T1w.nii.gz

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Leuven_2/sub-0050730/mri/wp1sub-0050730_T1w.nii.gz

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