[DATALAD RUNCMD] Compute USM/sub-0050497

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050497/anat/sub-0050497_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050497"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050497/label/catROI_sub-0050497_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/Jm/MD5E-s61444--d20b768ecefd72986bec442c4a633a42.mat/MD5E-s61444--d20b768ecefd72986bec442c4a633a42.mat

USM/sub-0050497/label/catROI_sub-0050497_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4k/wZ/MD5E-s189104--898a331a224b305f1685d37cbfb9f235.xml/MD5E-s189104--898a331a224b305f1685d37cbfb9f235.xml

USM/sub-0050497/label/catROIs_sub-0050497_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/Zq/MD5E-s120093--a39f68d9081e48180d8ab548bc1e1512.mat/MD5E-s120093--a39f68d9081e48180d8ab548bc1e1512.mat

USM/sub-0050497/label/catROIs_sub-0050497_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/3x/MD5E-s332154--5002b4aea56532efe6a9c64d41cff434.xml/MD5E-s332154--5002b4aea56532efe6a9c64d41cff434.xml

USM/sub-0050497/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050497/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/gg/MD5E-s409372--c52cc049bbaf7d1444132d9f68a680f1.nii.gz/MD5E-s409372--c52cc049bbaf7d1444132d9f68a680f1.nii.gz

USM/sub-0050497/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050497/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/kj/MD5E-s454925--bbf22b23ba657503b2eef4147bf920c5.nii.gz/MD5E-s454925--bbf22b23ba657503b2eef4147bf920c5.nii.gz

USM/sub-0050497/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050497/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mf/Zq/MD5E-s654725--44cefab1f368cf113b94bd651e4f49f9.nii.gz/MD5E-s654725--44cefab1f368cf113b94bd651e4f49f9.nii.gz

USM/sub-0050497/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050497/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/ZG/MD5E-s720195--cd27f4438dfb5f8057568dda161da2dc.nii.gz/MD5E-s720195--cd27f4438dfb5f8057568dda161da2dc.nii.gz

USM/sub-0050497/mri/Tian_Subcortex_S2_7T_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050497/mri/Tian_Subcortex_S2_7T_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G9/Qv/MD5E-s71342--632f4d211fe7a4a0cbc01ec5a793e30c.nii.gz/MD5E-s71342--632f4d211fe7a4a0cbc01ec5a793e30c.nii.gz

USM/sub-0050497/mri/aal3_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050497/mri/aal3_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/0k/MD5E-s463214--27d15d7fb401f00e9a5a4cbc7f95d279.nii.gz/MD5E-s463214--27d15d7fb401f00e9a5a4cbc7f95d279.nii.gz

USM/sub-0050497/mri/anatomy3_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050497/mri/anatomy3_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4q/1z/MD5E-s341276--de85f40f58be13cc7ce28aa7665fab98.nii.gz/MD5E-s341276--de85f40f58be13cc7ce28aa7665fab98.nii.gz

USM/sub-0050497/mri/anon_misub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zM/p8/MD5E-s19869133--2f9d144c2d54357a7b4ec4c41c432d0f.nii.gz/MD5E-s19869133--2f9d144c2d54357a7b4ec4c41c432d0f.nii.gz

USM/sub-0050497/mri/anon_msub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zX/pV/MD5E-s33364017--53cd6c33861f267c1965030c5a026085.nii.gz/MD5E-s33364017--53cd6c33861f267c1965030c5a026085.nii.gz

USM/sub-0050497/mri/cat_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M2/F7/MD5E-s262308--82128f5547ef2ceedd64b3d7a6279c24.nii.gz/MD5E-s262308--82128f5547ef2ceedd64b3d7a6279c24.nii.gz

USM/sub-0050497/mri/cobra_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050497/mri/cobra_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MG/QF/MD5E-s127960--fe6f8586d92c9a9f816db34392b29c41.nii.gz/MD5E-s127960--fe6f8586d92c9a9f816db34392b29c41.nii.gz

USM/sub-0050497/mri/hammers_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050497/mri/hammers_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f4/Jk/MD5E-s370497--3c21aadac5bf511aaf3b9d1961995dac.nii.gz/MD5E-s370497--3c21aadac5bf511aaf3b9d1961995dac.nii.gz

USM/sub-0050497/mri/ibsr_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050497/mri/ibsr_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/mX/MD5E-s393554--ae800d383343dfbb9931d7c1ba56b53e.nii.gz/MD5E-s393554--ae800d383343dfbb9931d7c1ba56b53e.nii.gz

USM/sub-0050497/mri/it_sub-0050497_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VG/K9/MD5E-s283--b37bd81c3cefc7f2758fab66f612ea4d.mat/MD5E-s283--b37bd81c3cefc7f2758fab66f612ea4d.mat

USM/sub-0050497/mri/it_sub-0050497_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/G0/43/MD5E-s284--982caf51510034dd2f36a37efb24e781.mat/MD5E-s284--982caf51510034dd2f36a37efb24e781.mat

USM/sub-0050497/mri/iy_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/41/MD5E-s166178046--7ee75835dd501df28263f245b1287569.nii.gz/MD5E-s166178046--7ee75835dd501df28263f245b1287569.nii.gz

USM/sub-0050497/mri/julichbrain_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050497/mri/julichbrain_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m9/46/MD5E-s486375--a9fc724bb60b9443b87d4b8b5d9f9a80.nii.gz/MD5E-s486375--a9fc724bb60b9443b87d4b8b5d9f9a80.nii.gz

USM/sub-0050497/mri/lpba40_sub-0050497_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050497/mri/lpba40_sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z4/1Z/MD5E-s364408--d884dfdc4fb995a357f54acf2ed818cd.nii.gz/MD5E-s364408--d884dfdc4fb995a357f54acf2ed818cd.nii.gz

USM/sub-0050497/mri/m0wp1sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/m0wp2sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/m0wp3sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/mori_sub-0050497_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050497/mri/mori_sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/mwp1sub-0050497_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050497/mri/mwp2sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/mwp3sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/neuromorphometrics_sub-0050497_T1w.csv

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USM/sub-0050497/mri/neuromorphometrics_sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/p0sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/p1sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/p2sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/p3sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/rp1sub-0050497_T1w_affine.nii.gz

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USM/sub-0050497/mri/rp2sub-0050497_T1w_affine.nii.gz

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USM/sub-0050497/mri/rp3sub-0050497_T1w_affine.nii.gz

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USM/sub-0050497/mri/t_sub-0050497_T1w_affine_reorient.mat

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USM/sub-0050497/mri/t_sub-0050497_T1w_rigid_reorient.mat

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USM/sub-0050497/mri/thalamus_sub-0050497_T1w.csv

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USM/sub-0050497/mri/thalamus_sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wj_sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wmisub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wmsub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wp0sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wp1sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wp2sub-0050497_T1w.nii.gz

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USM/sub-0050497/mri/wp3sub-0050497_T1w.nii.gz

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