[DATALAD RUNCMD] Compute Leuven_1/sub-0050682

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050682/anat/sub-0050682_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050682"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050682/label/catROI_sub-0050682_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/9X/MD5E-s61280--bcc8954a97e154de5ebb5fa105bf0404.mat/MD5E-s61280--bcc8954a97e154de5ebb5fa105bf0404.mat

Leuven_1/sub-0050682/label/catROI_sub-0050682_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/gv/MD5E-s188946--3f6c363cb5ab726365f95907b5449b79.xml/MD5E-s188946--3f6c363cb5ab726365f95907b5449b79.xml

Leuven_1/sub-0050682/label/catROIs_sub-0050682_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/XV/MD5E-s120025--44859034651e48a215de1f4937881660.mat/MD5E-s120025--44859034651e48a215de1f4937881660.mat

Leuven_1/sub-0050682/label/catROIs_sub-0050682_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/m3/9j/MD5E-s332121--a2ee9c96a98d5e3c368b459451a877ed.xml/MD5E-s332121--a2ee9c96a98d5e3c368b459451a877ed.xml

Leuven_1/sub-0050682/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050682/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/gq/MD5E-s171047--7b36c4b18430cfb2045022892c3f1f85.nii.gz/MD5E-s171047--7b36c4b18430cfb2045022892c3f1f85.nii.gz

Leuven_1/sub-0050682/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050682/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zX/4P/MD5E-s190778--55e794335cf20378b99b6b5a6a1634b8.nii.gz/MD5E-s190778--55e794335cf20378b99b6b5a6a1634b8.nii.gz

Leuven_1/sub-0050682/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050682/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/xJ/MD5E-s243506--0a338aede8afe191b1179ec8acaa8001.nii.gz/MD5E-s243506--0a338aede8afe191b1179ec8acaa8001.nii.gz

Leuven_1/sub-0050682/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050682/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZG/J4/MD5E-s270641--7325301b75d6fcfc5f06979d310e8b76.nii.gz/MD5E-s270641--7325301b75d6fcfc5f06979d310e8b76.nii.gz

Leuven_1/sub-0050682/mri/Tian_Subcortex_S2_7T_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050682/mri/Tian_Subcortex_S2_7T_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/aal3_sub-0050682_T1w.csv

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/aal3_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/anatomy3_sub-0050682_T1w.csv

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Leuven_1/sub-0050682/mri/anatomy3_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/anon_misub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/anon_msub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q5/xg/MD5E-s11656775--0e449457d6c3733383445706bf251c47.nii.gz/MD5E-s11656775--0e449457d6c3733383445706bf251c47.nii.gz

Leuven_1/sub-0050682/mri/cat_sub-0050682_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/cobra_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050682/mri/cobra_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/hammers_sub-0050682_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050682/mri/hammers_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/ibsr_sub-0050682_T1w.csv

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Leuven_1/sub-0050682/mri/ibsr_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/it_sub-0050682_T1w_affine_reorient.mat

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Leuven_1/sub-0050682/mri/it_sub-0050682_T1w_rigid_reorient.mat

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Leuven_1/sub-0050682/mri/iy_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/julichbrain_sub-0050682_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050682/mri/julichbrain_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/lpba40_sub-0050682_T1w.csv

@@ -0,0 +1 @@
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Leuven_1/sub-0050682/mri/lpba40_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/m0wp1sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/m0wp2sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/m0wp3sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/mori_sub-0050682_T1w.csv

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Leuven_1/sub-0050682/mri/mori_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/mwp1sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/mwp2sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/mwp3sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/neuromorphometrics_sub-0050682_T1w.csv

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Leuven_1/sub-0050682/mri/neuromorphometrics_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/p0sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/p1sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/p2sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/p3sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/rp1sub-0050682_T1w_affine.nii.gz

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Leuven_1/sub-0050682/mri/rp2sub-0050682_T1w_affine.nii.gz

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Leuven_1/sub-0050682/mri/rp3sub-0050682_T1w_affine.nii.gz

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Leuven_1/sub-0050682/mri/t_sub-0050682_T1w_affine_reorient.mat

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Leuven_1/sub-0050682/mri/t_sub-0050682_T1w_rigid_reorient.mat

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Leuven_1/sub-0050682/mri/thalamus_sub-0050682_T1w.csv

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Leuven_1/sub-0050682/mri/thalamus_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wj_sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wmisub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wmsub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wp0sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wp1sub-0050682_T1w.nii.gz

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Leuven_1/sub-0050682/mri/wp2sub-0050682_T1w.nii.gz

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