[DATALAD RUNCMD] Compute USM/sub-0050527

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050527/anat/sub-0050527_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050527"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050527/label/catROI_sub-0050527_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/mQ/MD5E-s61345--2b5b0fcae5ab28cfe1df9d225e9eb66d.mat/MD5E-s61345--2b5b0fcae5ab28cfe1df9d225e9eb66d.mat

USM/sub-0050527/label/catROI_sub-0050527_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FZ/mj/MD5E-s188704--9b9fe61c8812510352fa8e6f71d6fd4b.xml/MD5E-s188704--9b9fe61c8812510352fa8e6f71d6fd4b.xml

USM/sub-0050527/label/catROIs_sub-0050527_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jK/3q/MD5E-s119995--738fed2cccb3423eb54a9e092224c806.mat/MD5E-s119995--738fed2cccb3423eb54a9e092224c806.mat

USM/sub-0050527/label/catROIs_sub-0050527_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/49/v2/MD5E-s332143--2186427b265181e9606e9905319753e8.xml/MD5E-s332143--2186427b265181e9606e9905319753e8.xml

USM/sub-0050527/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050527/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1x/jk/MD5E-s417043--9d7f45fad5a9cd4d4c9179acea823038.nii.gz/MD5E-s417043--9d7f45fad5a9cd4d4c9179acea823038.nii.gz

USM/sub-0050527/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050527/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/XX/MD5E-s463037--d5a87ae9bd9c4c1f113efc7df63a5633.nii.gz/MD5E-s463037--d5a87ae9bd9c4c1f113efc7df63a5633.nii.gz

USM/sub-0050527/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050527/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W8/kJ/MD5E-s665841--686991bc0c1e7d0ccf29a0d6679c6e5c.nii.gz/MD5E-s665841--686991bc0c1e7d0ccf29a0d6679c6e5c.nii.gz

USM/sub-0050527/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050527/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/6q/MD5E-s731460--533b5847851770df9ac537eb235e8bff.nii.gz/MD5E-s731460--533b5847851770df9ac537eb235e8bff.nii.gz

USM/sub-0050527/mri/Tian_Subcortex_S2_7T_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050527/mri/Tian_Subcortex_S2_7T_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/V4/MD5E-s69956--709f83ca38dbf3c4647304da1a94d797.nii.gz/MD5E-s69956--709f83ca38dbf3c4647304da1a94d797.nii.gz

USM/sub-0050527/mri/aal3_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050527/mri/aal3_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Z/G2/MD5E-s461982--fea7e5ae8976265b2aba8f0830835a7f.nii.gz/MD5E-s461982--fea7e5ae8976265b2aba8f0830835a7f.nii.gz

USM/sub-0050527/mri/anatomy3_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050527/mri/anatomy3_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/Mv/MD5E-s348921--eb11fb117d0fca2331676e51599ea766.nii.gz/MD5E-s348921--eb11fb117d0fca2331676e51599ea766.nii.gz

USM/sub-0050527/mri/anon_misub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/53/MD5E-s19815121--50fc5e88c4e2d1aa95f58e6018be8330.nii.gz/MD5E-s19815121--50fc5e88c4e2d1aa95f58e6018be8330.nii.gz

USM/sub-0050527/mri/anon_msub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Q/ZM/MD5E-s34393149--b491ae1a739ccc320b99c0d6a3c8b9e7.nii.gz/MD5E-s34393149--b491ae1a739ccc320b99c0d6a3c8b9e7.nii.gz

USM/sub-0050527/mri/cat_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QZ/qX/MD5E-s255363--23e68b9cdb0033bc76549c589c4ee632.nii.gz/MD5E-s255363--23e68b9cdb0033bc76549c589c4ee632.nii.gz

USM/sub-0050527/mri/cobra_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050527/mri/cobra_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7q/3X/MD5E-s126164--44ff92b19c6cf7469b65ca10b01c9edc.nii.gz/MD5E-s126164--44ff92b19c6cf7469b65ca10b01c9edc.nii.gz

USM/sub-0050527/mri/hammers_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050527/mri/hammers_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XM/xW/MD5E-s369378--3f9ca28f237de75211ce6391df6081bf.nii.gz/MD5E-s369378--3f9ca28f237de75211ce6391df6081bf.nii.gz

USM/sub-0050527/mri/ibsr_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050527/mri/ibsr_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7k/Gv/MD5E-s396004--795b32d5b0be1d6211affef08424502d.nii.gz/MD5E-s396004--795b32d5b0be1d6211affef08424502d.nii.gz

USM/sub-0050527/mri/it_sub-0050527_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/gF/MD5E-s283--3d3b1e7805b91a03d9f34273f08f14db.mat/MD5E-s283--3d3b1e7805b91a03d9f34273f08f14db.mat

USM/sub-0050527/mri/it_sub-0050527_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/16/MD5E-s283--0b5af1181d3de49a9dfbc65fbe6c9556.mat/MD5E-s283--0b5af1181d3de49a9dfbc65fbe6c9556.mat

USM/sub-0050527/mri/iy_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qK/kK/MD5E-s170546539--42df3a85c31020fef970c1b27f92e1a6.nii.gz/MD5E-s170546539--42df3a85c31020fef970c1b27f92e1a6.nii.gz

USM/sub-0050527/mri/julichbrain_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050527/mri/julichbrain_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/q6/MD5E-s493375--32623e3ccce9718b015d911d9a8e1292.nii.gz/MD5E-s493375--32623e3ccce9718b015d911d9a8e1292.nii.gz

USM/sub-0050527/mri/lpba40_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050527/mri/lpba40_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j4/Z5/MD5E-s366332--1e92b010ce033ca5ac6ce4ff472a5ba6.nii.gz/MD5E-s366332--1e92b010ce033ca5ac6ce4ff472a5ba6.nii.gz

USM/sub-0050527/mri/m0wp1sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/G6/MD5E-s2551124--ea19309b9d3fedf2ffbf6f83f6d6b16b.nii.gz/MD5E-s2551124--ea19309b9d3fedf2ffbf6f83f6d6b16b.nii.gz

USM/sub-0050527/mri/m0wp2sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/72/vK/MD5E-s2266518--0103fd41c313b89e9ec3b462b4ca5e54.nii.gz/MD5E-s2266518--0103fd41c313b89e9ec3b462b4ca5e54.nii.gz

USM/sub-0050527/mri/m0wp3sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vm/2X/MD5E-s2455090--5bb054b655c5430b961b43fa05274e0b.nii.gz/MD5E-s2455090--5bb054b655c5430b961b43fa05274e0b.nii.gz

USM/sub-0050527/mri/mori_sub-0050527_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050527/mri/mori_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/jF/MD5E-s425450--284dd101b42f84d7ff54d628fca71bc9.nii.gz/MD5E-s425450--284dd101b42f84d7ff54d628fca71bc9.nii.gz

USM/sub-0050527/mri/mwp1sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/mwp2sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/qw/MD5E-s2265986--464cc79d57a6b2966ae6649e9ec2a993.nii.gz/MD5E-s2265986--464cc79d57a6b2966ae6649e9ec2a993.nii.gz

USM/sub-0050527/mri/mwp3sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v4/pf/MD5E-s2455314--9ecd7976ec1d627635afe6b0f03d07bf.nii.gz/MD5E-s2455314--9ecd7976ec1d627635afe6b0f03d07bf.nii.gz

USM/sub-0050527/mri/neuromorphometrics_sub-0050527_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050527/mri/neuromorphometrics_sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/p0sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zv/k0/MD5E-s4104238--b05358931a71983eb8a78e673fdbc86c.nii.gz/MD5E-s4104238--b05358931a71983eb8a78e673fdbc86c.nii.gz

USM/sub-0050527/mri/p1sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/p2sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/p3sub-0050527_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/rp1sub-0050527_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050527/mri/rp2sub-0050527_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/kP/MD5E-s278662--317cae34d1bb69bb4780072f53e7fa59.nii.gz/MD5E-s278662--317cae34d1bb69bb4780072f53e7fa59.nii.gz

USM/sub-0050527/mri/rp3sub-0050527_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/4X/MD5E-s251469--6fc8f2d613ecb82e13904cfe45024d23.nii.gz/MD5E-s251469--6fc8f2d613ecb82e13904cfe45024d23.nii.gz

USM/sub-0050527/mri/t_sub-0050527_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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USM/sub-0050527/mri/t_sub-0050527_T1w_rigid_reorient.mat

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USM/sub-0050527/mri/thalamus_sub-0050527_T1w.csv

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USM/sub-0050527/mri/thalamus_sub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wj_sub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wmisub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wmsub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wp0sub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wp1sub-0050527_T1w.nii.gz

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USM/sub-0050527/mri/wp2sub-0050527_T1w.nii.gz

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