[DATALAD RUNCMD] Compute Yale/sub-0050626

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050626/anat/sub-0050626_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050626"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050626/label/catROI_sub-0050626_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/pQ/MD5E-s58181--fa07825c9bc7caf841a24c8d8cbd1122.mat/MD5E-s58181--fa07825c9bc7caf841a24c8d8cbd1122.mat

Yale/sub-0050626/label/catROI_sub-0050626_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/39/Z5/MD5E-s188688--22114637da95c4c733bdcc4cedda36f7.xml/MD5E-s188688--22114637da95c4c733bdcc4cedda36f7.xml

Yale/sub-0050626/label/catROIs_sub-0050626_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zf/XK/MD5E-s120035--784a9b2e04b791cebec37c332c760acd.mat/MD5E-s120035--784a9b2e04b791cebec37c332c760acd.mat

Yale/sub-0050626/label/catROIs_sub-0050626_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/q5/Ff/MD5E-s332127--7e38baa53c1e440b91e1317563ae8f71.xml/MD5E-s332127--7e38baa53c1e440b91e1317563ae8f71.xml

Yale/sub-0050626/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050626/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mj/qk/MD5E-s189345--0be5bb78803a69035e4b7f53a52f10c9.nii.gz/MD5E-s189345--0be5bb78803a69035e4b7f53a52f10c9.nii.gz

Yale/sub-0050626/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050626/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/55/82/MD5E-s213921--589ef126e852539b66493e15f0813868.nii.gz/MD5E-s213921--589ef126e852539b66493e15f0813868.nii.gz

Yale/sub-0050626/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050626/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6P/6P/MD5E-s286174--9d7369684343000df273425f7c9d3475.nii.gz/MD5E-s286174--9d7369684343000df273425f7c9d3475.nii.gz

Yale/sub-0050626/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050626/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050626_T1w.nii.gz

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+../../../.git/annex/objects/W7/M0/MD5E-s319790--f15fa61177b7292e0178963537aa5173.nii.gz/MD5E-s319790--f15fa61177b7292e0178963537aa5173.nii.gz

Yale/sub-0050626/mri/Tian_Subcortex_S2_7T_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050626/mri/Tian_Subcortex_S2_7T_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/aal3_sub-0050626_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050626/mri/aal3_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/anatomy3_sub-0050626_T1w.csv

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Yale/sub-0050626/mri/anatomy3_sub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/22/MD5E-s154017--5b02bd0040c994d6c8a75f4d211dc887.nii.gz/MD5E-s154017--5b02bd0040c994d6c8a75f4d211dc887.nii.gz

Yale/sub-0050626/mri/anon_misub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/anon_msub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zK/F7/MD5E-s10435566--1132d3ad60fc592e5c4596dc4f6d0198.nii.gz/MD5E-s10435566--1132d3ad60fc592e5c4596dc4f6d0198.nii.gz

Yale/sub-0050626/mri/cat_sub-0050626_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WF/Fq/MD5E-s106618--aed1f927267ad61e051f867c66b5b3d7.nii.gz/MD5E-s106618--aed1f927267ad61e051f867c66b5b3d7.nii.gz

Yale/sub-0050626/mri/cobra_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050626/mri/cobra_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/hammers_sub-0050626_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050626/mri/hammers_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/ibsr_sub-0050626_T1w.csv

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Yale/sub-0050626/mri/ibsr_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/it_sub-0050626_T1w_affine_reorient.mat

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+../../../.git/annex/objects/pZ/6X/MD5E-s283--375b50af554a0a8e7a91b8a5df30c8ae.mat/MD5E-s283--375b50af554a0a8e7a91b8a5df30c8ae.mat

Yale/sub-0050626/mri/it_sub-0050626_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/p9/Fw/MD5E-s282--f9bb4a31bb686aea2b21b1381c4b5e64.mat/MD5E-s282--f9bb4a31bb686aea2b21b1381c4b5e64.mat

Yale/sub-0050626/mri/iy_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/julichbrain_sub-0050626_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050626/mri/julichbrain_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/lpba40_sub-0050626_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050626/mri/lpba40_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/m0wp1sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/m0wp2sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/m0wp3sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/mori_sub-0050626_T1w.csv

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Yale/sub-0050626/mri/mori_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/mwp1sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/mwp2sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/mwp3sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/neuromorphometrics_sub-0050626_T1w.csv

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Yale/sub-0050626/mri/neuromorphometrics_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/p0sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/p1sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/p2sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/p3sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/rp1sub-0050626_T1w_affine.nii.gz

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Yale/sub-0050626/mri/rp2sub-0050626_T1w_affine.nii.gz

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Yale/sub-0050626/mri/rp3sub-0050626_T1w_affine.nii.gz

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Yale/sub-0050626/mri/t_sub-0050626_T1w_affine_reorient.mat

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Yale/sub-0050626/mri/t_sub-0050626_T1w_rigid_reorient.mat

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Yale/sub-0050626/mri/thalamus_sub-0050626_T1w.csv

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Yale/sub-0050626/mri/thalamus_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wj_sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wmisub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wmsub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wp0sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wp1sub-0050626_T1w.nii.gz

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Yale/sub-0050626/mri/wp2sub-0050626_T1w.nii.gz

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