[DATALAD RUNCMD] Compute USM/sub-0050521

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050521/anat/sub-0050521_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050521"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050521/label/catROI_sub-0050521_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/0Z/MD5E-s61397--2db629941ea0fc70a12b15ca92caae64.mat/MD5E-s61397--2db629941ea0fc70a12b15ca92caae64.mat

USM/sub-0050521/label/catROI_sub-0050521_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7G/7p/MD5E-s189146--e8a1f145b6f5cb6b4bca2d059ac2cd49.xml/MD5E-s189146--e8a1f145b6f5cb6b4bca2d059ac2cd49.xml

USM/sub-0050521/label/catROIs_sub-0050521_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/Gv/MD5E-s120042--1b222a49eaeb4f3a28e388bee056deed.mat/MD5E-s120042--1b222a49eaeb4f3a28e388bee056deed.mat

USM/sub-0050521/label/catROIs_sub-0050521_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/m8/5Q/MD5E-s332144--8c1b62ba944d8412bdee669c23832269.xml/MD5E-s332144--8c1b62ba944d8412bdee669c23832269.xml

USM/sub-0050521/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050521/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/35/xW/MD5E-s384352--adbb8ffa05a79975ecea83ef3d269467.nii.gz/MD5E-s384352--adbb8ffa05a79975ecea83ef3d269467.nii.gz

USM/sub-0050521/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050521/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3G/7W/MD5E-s426734--f3032f85c094a0abfec50517c52c021d.nii.gz/MD5E-s426734--f3032f85c094a0abfec50517c52c021d.nii.gz

USM/sub-0050521/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050521/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/fV/MD5E-s616881--214ad566880395ea2b3a4df20e359426.nii.gz/MD5E-s616881--214ad566880395ea2b3a4df20e359426.nii.gz

USM/sub-0050521/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050521/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gq/8Z/MD5E-s679746--1c053fe476f47b885f4ee195189dcfb3.nii.gz/MD5E-s679746--1c053fe476f47b885f4ee195189dcfb3.nii.gz

USM/sub-0050521/mri/Tian_Subcortex_S2_7T_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050521/mri/Tian_Subcortex_S2_7T_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/Qz/MD5E-s68378--d4409836aaf339cedcb50801302dd8db.nii.gz/MD5E-s68378--d4409836aaf339cedcb50801302dd8db.nii.gz

USM/sub-0050521/mri/aal3_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050521/mri/aal3_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fz/ZV/MD5E-s437932--01c215a529b1910de21e7e3265015b9c.nii.gz/MD5E-s437932--01c215a529b1910de21e7e3265015b9c.nii.gz

USM/sub-0050521/mri/anatomy3_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050521/mri/anatomy3_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/gG/MD5E-s319704--4300189dad26b97eb79f9144e9adc2b2.nii.gz/MD5E-s319704--4300189dad26b97eb79f9144e9adc2b2.nii.gz

USM/sub-0050521/mri/anon_misub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vz/mj/MD5E-s17879914--234e8a11571b89d835fc2b6cb0d391c8.nii.gz/MD5E-s17879914--234e8a11571b89d835fc2b6cb0d391c8.nii.gz

USM/sub-0050521/mri/anon_msub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/7F/MD5E-s31104442--77c08737218b5df71424795e52755e80.nii.gz/MD5E-s31104442--77c08737218b5df71424795e52755e80.nii.gz

USM/sub-0050521/mri/cat_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0z/4Q/MD5E-s240333--77e5b8d3be5df59b2183003ac417ad9f.nii.gz/MD5E-s240333--77e5b8d3be5df59b2183003ac417ad9f.nii.gz

USM/sub-0050521/mri/cobra_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050521/mri/cobra_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/60/zz/MD5E-s123133--81c8a1917150782e00901a706f0b7bfe.nii.gz/MD5E-s123133--81c8a1917150782e00901a706f0b7bfe.nii.gz

USM/sub-0050521/mri/hammers_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050521/mri/hammers_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/7f/MD5E-s346381--95aa0abbca0c2d7b284f3a0edcd1c971.nii.gz/MD5E-s346381--95aa0abbca0c2d7b284f3a0edcd1c971.nii.gz

USM/sub-0050521/mri/ibsr_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050521/mri/ibsr_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3G/7v/MD5E-s368138--cc0d1e00aa3c39611f61cf261faf9276.nii.gz/MD5E-s368138--cc0d1e00aa3c39611f61cf261faf9276.nii.gz

USM/sub-0050521/mri/it_sub-0050521_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mf/F4/MD5E-s284--f1f78af2d7a4499cdc34dda4155ac615.mat/MD5E-s284--f1f78af2d7a4499cdc34dda4155ac615.mat

USM/sub-0050521/mri/it_sub-0050521_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mV/FZ/MD5E-s282--57f6b2bf69430351197945fd76756217.mat/MD5E-s282--57f6b2bf69430351197945fd76756217.mat

USM/sub-0050521/mri/iy_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/5f/MD5E-s150992480--13999add01dcc6de25f1c9b4630c5539.nii.gz/MD5E-s150992480--13999add01dcc6de25f1c9b4630c5539.nii.gz

USM/sub-0050521/mri/julichbrain_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050521/mri/julichbrain_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P6/pv/MD5E-s453837--d512f7ff266597b82484af3a82269fe6.nii.gz/MD5E-s453837--d512f7ff266597b82484af3a82269fe6.nii.gz

USM/sub-0050521/mri/lpba40_sub-0050521_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050521/mri/lpba40_sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/m0wp1sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/4x/MD5E-s2567279--3bcb2111abddd0391bca5184a1d8ff1d.nii.gz/MD5E-s2567279--3bcb2111abddd0391bca5184a1d8ff1d.nii.gz

USM/sub-0050521/mri/m0wp2sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/m0wp3sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/mori_sub-0050521_T1w.csv

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USM/sub-0050521/mri/mori_sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/mwp1sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/w3/MD5E-s2572938--70a50dc3cfa176e47b71a82c0e8aaa5b.nii.gz/MD5E-s2572938--70a50dc3cfa176e47b71a82c0e8aaa5b.nii.gz

USM/sub-0050521/mri/mwp2sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/mwp3sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/neuromorphometrics_sub-0050521_T1w.csv

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USM/sub-0050521/mri/neuromorphometrics_sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/p0sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/p1sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/p2sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/p3sub-0050521_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/rp1sub-0050521_T1w_affine.nii.gz

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USM/sub-0050521/mri/rp2sub-0050521_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050521/mri/rp3sub-0050521_T1w_affine.nii.gz

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USM/sub-0050521/mri/t_sub-0050521_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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USM/sub-0050521/mri/t_sub-0050521_T1w_rigid_reorient.mat

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USM/sub-0050521/mri/thalamus_sub-0050521_T1w.csv

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USM/sub-0050521/mri/thalamus_sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wj_sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wmisub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wmsub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wp0sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wp1sub-0050521_T1w.nii.gz

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USM/sub-0050521/mri/wp2sub-0050521_T1w.nii.gz

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