[DATALAD RUNCMD] Compute Pitt/sub-0050040

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050040/anat/sub-0050040_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050040"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050040/label/catROI_sub-0050040_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5v/7m/MD5E-s61304--f027e9d4376a6c1da6cda9ace0b633d3.mat/MD5E-s61304--f027e9d4376a6c1da6cda9ace0b633d3.mat

Pitt/sub-0050040/label/catROI_sub-0050040_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jk/Gm/MD5E-s188944--897d258336db2bb976704543d828abc9.xml/MD5E-s188944--897d258336db2bb976704543d828abc9.xml

Pitt/sub-0050040/label/catROIs_sub-0050040_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vm/01/MD5E-s120145--935533c36b0fcdc7d9ba5e2854b8110d.mat/MD5E-s120145--935533c36b0fcdc7d9ba5e2854b8110d.mat

Pitt/sub-0050040/label/catROIs_sub-0050040_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/63/MD5E-s332123--4250d9bf39226c60fbf89c283536186b.xml/MD5E-s332123--4250d9bf39226c60fbf89c283536186b.xml

Pitt/sub-0050040/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050040/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/67/V8/MD5E-s151385--23da918c2e477fada7c2453899552886.nii.gz/MD5E-s151385--23da918c2e477fada7c2453899552886.nii.gz

Pitt/sub-0050040/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050040/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mw/VG/MD5E-s171630--7d0957ff6a12d6e065095dde342134cc.nii.gz/MD5E-s171630--7d0957ff6a12d6e065095dde342134cc.nii.gz

Pitt/sub-0050040/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050040/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050040/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/Vp/MD5E-s256161--3075634b60c053a289c3a5ef88e923bf.nii.gz/MD5E-s256161--3075634b60c053a289c3a5ef88e923bf.nii.gz

Pitt/sub-0050040/mri/Tian_Subcortex_S2_7T_sub-0050040_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050040/mri/Tian_Subcortex_S2_7T_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/aal3_sub-0050040_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050040/mri/aal3_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/anatomy3_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/anatomy3_sub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050040/mri/anon_misub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/anon_msub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xP/pf/MD5E-s12776146--64186a3e796e93bc492a280b7a2482c4.nii.gz/MD5E-s12776146--64186a3e796e93bc492a280b7a2482c4.nii.gz

Pitt/sub-0050040/mri/cat_sub-0050040_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050040/mri/cobra_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050040/mri/cobra_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/hammers_sub-0050040_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050040/mri/hammers_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/ibsr_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/ibsr_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/it_sub-0050040_T1w_affine_reorient.mat

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Pitt/sub-0050040/mri/it_sub-0050040_T1w_rigid_reorient.mat

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Pitt/sub-0050040/mri/iy_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/julichbrain_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/julichbrain_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/lpba40_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/lpba40_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/m0wp1sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/m0wp2sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/m0wp3sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/mori_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/mori_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/mwp1sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/mwp2sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/mwp3sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/neuromorphometrics_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/neuromorphometrics_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/p0sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/p1sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/p2sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/p3sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/rp1sub-0050040_T1w_affine.nii.gz

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Pitt/sub-0050040/mri/rp2sub-0050040_T1w_affine.nii.gz

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Pitt/sub-0050040/mri/rp3sub-0050040_T1w_affine.nii.gz

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Pitt/sub-0050040/mri/t_sub-0050040_T1w_affine_reorient.mat

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Pitt/sub-0050040/mri/t_sub-0050040_T1w_rigid_reorient.mat

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Pitt/sub-0050040/mri/thalamus_sub-0050040_T1w.csv

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Pitt/sub-0050040/mri/thalamus_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wj_sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wmisub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wp0sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wp1sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wp2sub-0050040_T1w.nii.gz

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Pitt/sub-0050040/mri/wp3sub-0050040_T1w.nii.gz

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