[DATALAD RUNCMD] Compute Leuven_1/sub-0050699

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050699/anat/sub-0050699_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050699"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050699/label/catROI_sub-0050699_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/G8/MD5E-s61303--d01f055b6dd97a989e718adc8b15caf0.mat/MD5E-s61303--d01f055b6dd97a989e718adc8b15caf0.mat

Leuven_1/sub-0050699/label/catROI_sub-0050699_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F4/Xf/MD5E-s188681--6639806ae15bbb68bbf13205db70418c.xml/MD5E-s188681--6639806ae15bbb68bbf13205db70418c.xml

Leuven_1/sub-0050699/label/catROIs_sub-0050699_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/G2/MD5E-s120001--3c7605d96e36262660550c55e666b461.mat/MD5E-s120001--3c7605d96e36262660550c55e666b461.mat

Leuven_1/sub-0050699/label/catROIs_sub-0050699_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j8/Xj/MD5E-s332088--8dc9194ceeefbba873c4d49521a86ff6.xml/MD5E-s332088--8dc9194ceeefbba873c4d49521a86ff6.xml

Leuven_1/sub-0050699/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050699/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/FW/MD5E-s181861--cd5f080ab6ba043560102d5935db6e8b.nii.gz/MD5E-s181861--cd5f080ab6ba043560102d5935db6e8b.nii.gz

Leuven_1/sub-0050699/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050699/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m9/Pw/MD5E-s203512--5305e8115fad895d32b8812339234892.nii.gz/MD5E-s203512--5305e8115fad895d32b8812339234892.nii.gz

Leuven_1/sub-0050699/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050699/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ww/f6/MD5E-s258111--b945688e61d19d6a7f95b565f78971c0.nii.gz/MD5E-s258111--b945688e61d19d6a7f95b565f78971c0.nii.gz

Leuven_1/sub-0050699/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050699/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xJ/G4/MD5E-s288091--df10451b5d95d3028bc8df9a395dd222.nii.gz/MD5E-s288091--df10451b5d95d3028bc8df9a395dd222.nii.gz

Leuven_1/sub-0050699/mri/Tian_Subcortex_S2_7T_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050699/mri/Tian_Subcortex_S2_7T_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/92/1q/MD5E-s26445--b28472b8ce25fa4294f76bb0dba53717.nii.gz/MD5E-s26445--b28472b8ce25fa4294f76bb0dba53717.nii.gz

Leuven_1/sub-0050699/mri/aal3_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050699/mri/aal3_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/anatomy3_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050699/mri/anatomy3_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mm/9X/MD5E-s145675--88cc82231ea7b6de218ea2106da1a4e9.nii.gz/MD5E-s145675--88cc82231ea7b6de218ea2106da1a4e9.nii.gz

Leuven_1/sub-0050699/mri/anon_misub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4P/Gk/MD5E-s5376245--a822827f6febc62091417741e57a8bd9.nii.gz/MD5E-s5376245--a822827f6febc62091417741e57a8bd9.nii.gz

Leuven_1/sub-0050699/mri/anon_msub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z4/5J/MD5E-s12022315--ab201c07b8740f4bb402bed6a49c4396.nii.gz/MD5E-s12022315--ab201c07b8740f4bb402bed6a49c4396.nii.gz

Leuven_1/sub-0050699/mri/cat_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9x/Mm/MD5E-s107535--7692b430f8e47606b615e781899f42f2.nii.gz/MD5E-s107535--7692b430f8e47606b615e781899f42f2.nii.gz

Leuven_1/sub-0050699/mri/cobra_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050699/mri/cobra_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jg/zJ/MD5E-s53904--be075dc3a16edd0bbec34826d1e8808c.nii.gz/MD5E-s53904--be075dc3a16edd0bbec34826d1e8808c.nii.gz

Leuven_1/sub-0050699/mri/hammers_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050699/mri/hammers_sub-0050699_T1w.nii.gz

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+../../../.git/annex/objects/11/v5/MD5E-s161710--68369d67e3c0ce7e595e993070d7ea42.nii.gz/MD5E-s161710--68369d67e3c0ce7e595e993070d7ea42.nii.gz

Leuven_1/sub-0050699/mri/ibsr_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050699/mri/ibsr_sub-0050699_T1w.nii.gz

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+../../../.git/annex/objects/65/KX/MD5E-s165537--0aaf1b7329375e51dd028294ff22af59.nii.gz/MD5E-s165537--0aaf1b7329375e51dd028294ff22af59.nii.gz

Leuven_1/sub-0050699/mri/it_sub-0050699_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/zw/MD5E-s282--2056b318920788fe10e45a4e709f39fa.mat/MD5E-s282--2056b318920788fe10e45a4e709f39fa.mat

Leuven_1/sub-0050699/mri/it_sub-0050699_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gW/Vq/MD5E-s283--b75a83980ce11e3171d9c385fd2f2dcb.mat/MD5E-s283--b75a83980ce11e3171d9c385fd2f2dcb.mat

Leuven_1/sub-0050699/mri/iy_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/1K/MD5E-s45161866--67745c25a06fae25b8f47a6d04ab5fb4.nii.gz/MD5E-s45161866--67745c25a06fae25b8f47a6d04ab5fb4.nii.gz

Leuven_1/sub-0050699/mri/julichbrain_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050699/mri/julichbrain_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/4g/MD5E-s216930--56b6fbaababa25e5d0886d3b78d143ae.nii.gz/MD5E-s216930--56b6fbaababa25e5d0886d3b78d143ae.nii.gz

Leuven_1/sub-0050699/mri/lpba40_sub-0050699_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050699/mri/lpba40_sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/m0wp1sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/m0wp2sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/m0wp3sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/mori_sub-0050699_T1w.csv

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Leuven_1/sub-0050699/mri/mori_sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/mwp1sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/mwp2sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/mwp3sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/neuromorphometrics_sub-0050699_T1w.csv

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/neuromorphometrics_sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/p0sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/p1sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/p2sub-0050699_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/p3sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/rp1sub-0050699_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050699/mri/rp2sub-0050699_T1w_affine.nii.gz

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Leuven_1/sub-0050699/mri/rp3sub-0050699_T1w_affine.nii.gz

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Leuven_1/sub-0050699/mri/t_sub-0050699_T1w_affine_reorient.mat

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Leuven_1/sub-0050699/mri/t_sub-0050699_T1w_rigid_reorient.mat

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Leuven_1/sub-0050699/mri/thalamus_sub-0050699_T1w.csv

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Leuven_1/sub-0050699/mri/thalamus_sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wj_sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wmisub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wmsub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wp0sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wp1sub-0050699_T1w.nii.gz

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Leuven_1/sub-0050699/mri/wp2sub-0050699_T1w.nii.gz

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