[DATALAD RUNCMD] Compute NYU/sub-0051003

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0051003/anat/sub-0051003_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0051003"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0051003/label/catROI_sub-0051003_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gz/mK/MD5E-s58042--188979582a9df41a564ba1501d90d7c3.mat/MD5E-s58042--188979582a9df41a564ba1501d90d7c3.mat

NYU/sub-0051003/label/catROI_sub-0051003_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mj/3M/MD5E-s188830--5a30f1f676b705aca7b571e508bf81c1.xml/MD5E-s188830--5a30f1f676b705aca7b571e508bf81c1.xml

NYU/sub-0051003/label/catROIs_sub-0051003_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/G8/MD5E-s120337--7cddc7804b7280eb6b2fa461874e93dc.mat/MD5E-s120337--7cddc7804b7280eb6b2fa461874e93dc.mat

NYU/sub-0051003/label/catROIs_sub-0051003_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/PK/MD5E-s332170--ee6f6f94fbb7cbde45e963ba40926f7f.xml/MD5E-s332170--ee6f6f94fbb7cbde45e963ba40926f7f.xml

NYU/sub-0051003/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0051003/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/fJ/MD5E-s155116--92669cbf851318c5268e1fc911f6e3ad.nii.gz/MD5E-s155116--92669cbf851318c5268e1fc911f6e3ad.nii.gz

NYU/sub-0051003/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0051003/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/30/VQ/MD5E-s172454--f4453324355e74fc43726fb4c3ae28ac.nii.gz/MD5E-s172454--f4453324355e74fc43726fb4c3ae28ac.nii.gz

NYU/sub-0051003/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0051003/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051003_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0051003/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/3G/MD5E-s257329--9f9809b168442ea42e7276b89c522275.nii.gz/MD5E-s257329--9f9809b168442ea42e7276b89c522275.nii.gz

NYU/sub-0051003/mri/Tian_Subcortex_S2_7T_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0051003/mri/Tian_Subcortex_S2_7T_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/aal3_sub-0051003_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051003/mri/aal3_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/anatomy3_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/anatomy3_sub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0051003/mri/anon_misub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0051003/mri/anon_msub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0051003/mri/cat_sub-0051003_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/kQ/MD5E-s94788--4eea90cad31f5dd5a6a9585b4daee6cb.nii.gz/MD5E-s94788--4eea90cad31f5dd5a6a9585b4daee6cb.nii.gz

NYU/sub-0051003/mri/cobra_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0051003/mri/cobra_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/hammers_sub-0051003_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0051003/mri/hammers_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/ibsr_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/ibsr_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/it_sub-0051003_T1w_affine_reorient.mat

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+../../../.git/annex/objects/X2/zz/MD5E-s283--e9ac9002a78dd25ac83636ed8d09905e.mat/MD5E-s283--e9ac9002a78dd25ac83636ed8d09905e.mat

NYU/sub-0051003/mri/it_sub-0051003_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/2Z/4G/MD5E-s282--c60be8c469bad25482088b2c0c60a9e6.mat/MD5E-s282--c60be8c469bad25482088b2c0c60a9e6.mat

NYU/sub-0051003/mri/iy_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/julichbrain_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/julichbrain_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/lpba40_sub-0051003_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051003/mri/lpba40_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/m0wp1sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/m0wp2sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/m0wp3sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/mori_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/mori_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/mwp1sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/mwp2sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/mwp3sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/neuromorphometrics_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/neuromorphometrics_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/p0sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/p1sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/p2sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/p3sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/rp1sub-0051003_T1w_affine.nii.gz

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NYU/sub-0051003/mri/rp2sub-0051003_T1w_affine.nii.gz

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NYU/sub-0051003/mri/rp3sub-0051003_T1w_affine.nii.gz

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NYU/sub-0051003/mri/t_sub-0051003_T1w_affine_reorient.mat

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NYU/sub-0051003/mri/t_sub-0051003_T1w_rigid_reorient.mat

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NYU/sub-0051003/mri/thalamus_sub-0051003_T1w.csv

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NYU/sub-0051003/mri/thalamus_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wj_sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wmisub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wmsub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wp0sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wp1sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wp2sub-0051003_T1w.nii.gz

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NYU/sub-0051003/mri/wp3sub-0051003_T1w.nii.gz

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