[DATALAD RUNCMD] Compute NYU/sub-0050969

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050969/anat/sub-0050969_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050969"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050969/label/catROI_sub-0050969_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MX/P8/MD5E-s57805--132e1ed7bed619dbb55fbab0dd353f05.mat/MD5E-s57805--132e1ed7bed619dbb55fbab0dd353f05.mat

NYU/sub-0050969/label/catROI_sub-0050969_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F9/28/MD5E-s189010--6235937ce7d2e722d06ba5bf28903c9b.xml/MD5E-s189010--6235937ce7d2e722d06ba5bf28903c9b.xml

NYU/sub-0050969/label/catROIs_sub-0050969_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4m/F7/MD5E-s120306--b528bca5392320dfe1fc5060765bb134.mat/MD5E-s120306--b528bca5392320dfe1fc5060765bb134.mat

NYU/sub-0050969/label/catROIs_sub-0050969_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fK/4K/MD5E-s332205--4f3bae9575fee76ee4ee5f498ce40cd9.xml/MD5E-s332205--4f3bae9575fee76ee4ee5f498ce40cd9.xml

NYU/sub-0050969/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050969/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/Zk/MD5E-s136331--25808ce387305858d72e3b1777032d46.nii.gz/MD5E-s136331--25808ce387305858d72e3b1777032d46.nii.gz

NYU/sub-0050969/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050969/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/vG/MD5E-s153630--efa3b74c42d491cedfa63ada1fd771c1.nii.gz/MD5E-s153630--efa3b74c42d491cedfa63ada1fd771c1.nii.gz

NYU/sub-0050969/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050969/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/kq/MD5E-s204428--4e7b33192f014830f29055e5b6bb0e81.nii.gz/MD5E-s204428--4e7b33192f014830f29055e5b6bb0e81.nii.gz

NYU/sub-0050969/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050969/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/fQ/MD5E-s227461--ee67ef2cb69abf4529c590dacbbd870a.nii.gz/MD5E-s227461--ee67ef2cb69abf4529c590dacbbd870a.nii.gz

NYU/sub-0050969/mri/Tian_Subcortex_S2_7T_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050969/mri/Tian_Subcortex_S2_7T_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/2P/MD5E-s18656--52c1ffc89141dc1d72243c5d15a636cd.nii.gz/MD5E-s18656--52c1ffc89141dc1d72243c5d15a636cd.nii.gz

NYU/sub-0050969/mri/aal3_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/aal3_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/anatomy3_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/anatomy3_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z7/8P/MD5E-s109890--073421973f8eb041c5895a454c8a0bb9.nii.gz/MD5E-s109890--073421973f8eb041c5895a454c8a0bb9.nii.gz

NYU/sub-0050969/mri/anon_misub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050969/mri/anon_msub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/kj/MD5E-s6554114--5601ad4b19000e65adbf3a68b2907653.nii.gz/MD5E-s6554114--5601ad4b19000e65adbf3a68b2907653.nii.gz

NYU/sub-0050969/mri/cat_sub-0050969_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/91/jM/MD5E-s81224--4f3c4252b25b9170177c000c58c5e60a.nii.gz/MD5E-s81224--4f3c4252b25b9170177c000c58c5e60a.nii.gz

NYU/sub-0050969/mri/cobra_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050969/mri/cobra_sub-0050969_T1w.nii.gz

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+../../../.git/annex/objects/W3/4v/MD5E-s38850--b0e3503a61e1889357da5a1c0911e16e.nii.gz/MD5E-s38850--b0e3503a61e1889357da5a1c0911e16e.nii.gz

NYU/sub-0050969/mri/hammers_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050969/mri/hammers_sub-0050969_T1w.nii.gz

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+../../../.git/annex/objects/GX/ZP/MD5E-s119206--2d1a6751a258a5682dafdcffbd359112.nii.gz/MD5E-s119206--2d1a6751a258a5682dafdcffbd359112.nii.gz

NYU/sub-0050969/mri/ibsr_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/ibsr_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/it_sub-0050969_T1w_affine_reorient.mat

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+../../../.git/annex/objects/Vq/3x/MD5E-s283--e205f72f9775e74f0d18ad5c35fbb590.mat/MD5E-s283--e205f72f9775e74f0d18ad5c35fbb590.mat

NYU/sub-0050969/mri/it_sub-0050969_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/w7/0Z/MD5E-s283--c54c971b1c4706d2b95668e732cf9536.mat/MD5E-s283--c54c971b1c4706d2b95668e732cf9536.mat

NYU/sub-0050969/mri/iy_sub-0050969_T1w.nii.gz

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+../../../.git/annex/objects/Kj/7M/MD5E-s29630223--30fb04f6acae014bc626c44be33fb899.nii.gz/MD5E-s29630223--30fb04f6acae014bc626c44be33fb899.nii.gz

NYU/sub-0050969/mri/julichbrain_sub-0050969_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050969/mri/julichbrain_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/lpba40_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/lpba40_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/m0wp1sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/m0wp2sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/m0wp3sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/mori_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/mori_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/mwp1sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/mwp2sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/mwp3sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/neuromorphometrics_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/neuromorphometrics_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/p0sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/p1sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/p2sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/p3sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/rp1sub-0050969_T1w_affine.nii.gz

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NYU/sub-0050969/mri/rp2sub-0050969_T1w_affine.nii.gz

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NYU/sub-0050969/mri/rp3sub-0050969_T1w_affine.nii.gz

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NYU/sub-0050969/mri/t_sub-0050969_T1w_affine_reorient.mat

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NYU/sub-0050969/mri/t_sub-0050969_T1w_rigid_reorient.mat

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NYU/sub-0050969/mri/thalamus_sub-0050969_T1w.csv

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NYU/sub-0050969/mri/thalamus_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wj_sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wmisub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wmsub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wp0sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wp1sub-0050969_T1w.nii.gz

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NYU/sub-0050969/mri/wp2sub-0050969_T1w.nii.gz

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