[DATALAD RUNCMD] Compute USM/sub-0050519

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050519/anat/sub-0050519_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050519"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050519/label/catROI_sub-0050519_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/PG/MD5E-s61426--3dc81e2e45ce9408caadd5dcbc8d43aa.mat/MD5E-s61426--3dc81e2e45ce9408caadd5dcbc8d43aa.mat

USM/sub-0050519/label/catROI_sub-0050519_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0K/Vm/MD5E-s189062--a112b271c482c6879866b89110a1cfb5.xml/MD5E-s189062--a112b271c482c6879866b89110a1cfb5.xml

USM/sub-0050519/label/catROIs_sub-0050519_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kw/Mw/MD5E-s120102--42de2be30640615b3c221d760cc73286.mat/MD5E-s120102--42de2be30640615b3c221d760cc73286.mat

USM/sub-0050519/label/catROIs_sub-0050519_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3k/11/MD5E-s332121--503e6fbc8b2c88a9644d84b66fa79472.xml/MD5E-s332121--503e6fbc8b2c88a9644d84b66fa79472.xml

USM/sub-0050519/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050519/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KV/k3/MD5E-s386815--5137ef1a51073e17023facf8d8d8018f.nii.gz/MD5E-s386815--5137ef1a51073e17023facf8d8d8018f.nii.gz

USM/sub-0050519/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050519/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/73/4J/MD5E-s430051--67f7b8a4c9b94fe84adfcb87665be1b1.nii.gz/MD5E-s430051--67f7b8a4c9b94fe84adfcb87665be1b1.nii.gz

USM/sub-0050519/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050519/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zv/4G/MD5E-s611639--bb099c854a1def5be50ba1863cb3222b.nii.gz/MD5E-s611639--bb099c854a1def5be50ba1863cb3222b.nii.gz

USM/sub-0050519/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050519/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/26/6F/MD5E-s676056--245d8253370efe4dd3809c27889cf5fc.nii.gz/MD5E-s676056--245d8253370efe4dd3809c27889cf5fc.nii.gz

USM/sub-0050519/mri/Tian_Subcortex_S2_7T_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050519/mri/Tian_Subcortex_S2_7T_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/2k/MD5E-s56779--b827ad5babfad7744e18e4711872f04a.nii.gz/MD5E-s56779--b827ad5babfad7744e18e4711872f04a.nii.gz

USM/sub-0050519/mri/aal3_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050519/mri/aal3_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JX/fx/MD5E-s437636--9af8f905b2524fa668caa5551b2dd156.nii.gz/MD5E-s437636--9af8f905b2524fa668caa5551b2dd156.nii.gz

USM/sub-0050519/mri/anatomy3_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050519/mri/anatomy3_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6g/pF/MD5E-s324319--1d277e5985bc0dc7b861c6dd17a448f1.nii.gz/MD5E-s324319--1d277e5985bc0dc7b861c6dd17a448f1.nii.gz

USM/sub-0050519/mri/anon_misub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6W/6Q/MD5E-s20602280--d1ed917aad9a2e653cfa5c4706c49b39.nii.gz/MD5E-s20602280--d1ed917aad9a2e653cfa5c4706c49b39.nii.gz

USM/sub-0050519/mri/anon_msub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/WV/MD5E-s28472257--81708a94187de5287bbe96868bd329c3.nii.gz/MD5E-s28472257--81708a94187de5287bbe96868bd329c3.nii.gz

USM/sub-0050519/mri/cat_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gg/9K/MD5E-s244335--e0da8d22926b42184d6f83dba9011068.nii.gz/MD5E-s244335--e0da8d22926b42184d6f83dba9011068.nii.gz

USM/sub-0050519/mri/cobra_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050519/mri/cobra_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3p/V4/MD5E-s118534--ee76ffabfa8ba9cd658770bfca9c855b.nii.gz/MD5E-s118534--ee76ffabfa8ba9cd658770bfca9c855b.nii.gz

USM/sub-0050519/mri/hammers_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050519/mri/hammers_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/Gp/MD5E-s350270--021fbd04eaf061cb9ac0baf3e744e624.nii.gz/MD5E-s350270--021fbd04eaf061cb9ac0baf3e744e624.nii.gz

USM/sub-0050519/mri/ibsr_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050519/mri/ibsr_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kj/09/MD5E-s372839--7b7608def8ad2a1c2c5d8e7c7c3d0477.nii.gz/MD5E-s372839--7b7608def8ad2a1c2c5d8e7c7c3d0477.nii.gz

USM/sub-0050519/mri/it_sub-0050519_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/82/9P/MD5E-s283--377f544e7c2e596f6f02983533740071.mat/MD5E-s283--377f544e7c2e596f6f02983533740071.mat

USM/sub-0050519/mri/it_sub-0050519_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/84/F0/MD5E-s283--0f9e67a2c7a80d8adb595042b6dbe38a.mat/MD5E-s283--0f9e67a2c7a80d8adb595042b6dbe38a.mat

USM/sub-0050519/mri/iy_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/47/MD5E-s160027898--688a110b06fcaea6704d90b3d73f3efb.nii.gz/MD5E-s160027898--688a110b06fcaea6704d90b3d73f3efb.nii.gz

USM/sub-0050519/mri/julichbrain_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050519/mri/julichbrain_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/4Z/MD5E-s461002--3ed21f56f542a2fdc5f043433e7529f5.nii.gz/MD5E-s461002--3ed21f56f542a2fdc5f043433e7529f5.nii.gz

USM/sub-0050519/mri/lpba40_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050519/mri/lpba40_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P3/w4/MD5E-s341028--287bd679c577a2675df60d19f8308f7a.nii.gz/MD5E-s341028--287bd679c577a2675df60d19f8308f7a.nii.gz

USM/sub-0050519/mri/m0wp1sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/56/2G/MD5E-s2552513--ca1b49ad8b72203227f3c1c043259d12.nii.gz/MD5E-s2552513--ca1b49ad8b72203227f3c1c043259d12.nii.gz

USM/sub-0050519/mri/m0wp2sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6z/vv/MD5E-s2274559--f801b3590adb575e427ec57545e23695.nii.gz/MD5E-s2274559--f801b3590adb575e427ec57545e23695.nii.gz

USM/sub-0050519/mri/m0wp3sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vK/VZ/MD5E-s2497374--289d660fffdc3268f4d758191ba85312.nii.gz/MD5E-s2497374--289d660fffdc3268f4d758191ba85312.nii.gz

USM/sub-0050519/mri/mori_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050519/mri/mori_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/qw/MD5E-s402639--2f8b546a41ab26a754736fec54543ccc.nii.gz/MD5E-s402639--2f8b546a41ab26a754736fec54543ccc.nii.gz

USM/sub-0050519/mri/mwp1sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/Fq/MD5E-s2555573--4bd94793da1150ed3b9c3d8b6dcb66ff.nii.gz/MD5E-s2555573--4bd94793da1150ed3b9c3d8b6dcb66ff.nii.gz

USM/sub-0050519/mri/mwp2sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jW/47/MD5E-s2275419--602ce238ceb37ae9f58191348e5a449b.nii.gz/MD5E-s2275419--602ce238ceb37ae9f58191348e5a449b.nii.gz

USM/sub-0050519/mri/mwp3sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/Vm/MD5E-s2497288--149de503b64ad48bbeff53f6e4c5f268.nii.gz/MD5E-s2497288--149de503b64ad48bbeff53f6e4c5f268.nii.gz

USM/sub-0050519/mri/neuromorphometrics_sub-0050519_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050519/mri/neuromorphometrics_sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xz/Xz/MD5E-s475787--17f6cead2384eacb79198050fc9116d5.nii.gz/MD5E-s475787--17f6cead2384eacb79198050fc9116d5.nii.gz

USM/sub-0050519/mri/p0sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F7/XQ/MD5E-s3993225--928e79877771bc0e04914ce6fae38447.nii.gz/MD5E-s3993225--928e79877771bc0e04914ce6fae38447.nii.gz

USM/sub-0050519/mri/p1sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fp/5m/MD5E-s3881383--bc3401be5c82f599be5a74adbfb7adc2.nii.gz/MD5E-s3881383--bc3401be5c82f599be5a74adbfb7adc2.nii.gz

USM/sub-0050519/mri/p2sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050519/mri/p3sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FG/v1/MD5E-s2627289--0d3fd748050038cdae820dc407ce3651.nii.gz/MD5E-s2627289--0d3fd748050038cdae820dc407ce3651.nii.gz

USM/sub-0050519/mri/rp1sub-0050519_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050519/mri/rp2sub-0050519_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/92/MD5E-s282593--2f0edf2dc27db044ac52029d6fa83aec.nii.gz/MD5E-s282593--2f0edf2dc27db044ac52029d6fa83aec.nii.gz

USM/sub-0050519/mri/rp3sub-0050519_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2X/W8/MD5E-s262503--d1fa3a932b638433258c23e5e5e085e6.nii.gz/MD5E-s262503--d1fa3a932b638433258c23e5e5e085e6.nii.gz

USM/sub-0050519/mri/t_sub-0050519_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kw/6m/MD5E-s285--7f38490dbbb758fb7aab33cbc4060379.mat/MD5E-s285--7f38490dbbb758fb7aab33cbc4060379.mat

USM/sub-0050519/mri/t_sub-0050519_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/JJ/xz/MD5E-s284--b28b9fef5b52a45cdec93bc738b9d29f.mat/MD5E-s284--b28b9fef5b52a45cdec93bc738b9d29f.mat

USM/sub-0050519/mri/thalamus_sub-0050519_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050519/mri/thalamus_sub-0050519_T1w.nii.gz

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USM/sub-0050519/mri/wj_sub-0050519_T1w.nii.gz

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USM/sub-0050519/mri/wmisub-0050519_T1w.nii.gz

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USM/sub-0050519/mri/wmsub-0050519_T1w.nii.gz

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USM/sub-0050519/mri/wp0sub-0050519_T1w.nii.gz

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USM/sub-0050519/mri/wp1sub-0050519_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050519/mri/wp2sub-0050519_T1w.nii.gz

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