[DATALAD RUNCMD] Compute UM_2/sub-0050428

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050428/anat/sub-0050428_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050428"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050428/label/catROI_sub-0050428_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/Jm/MD5E-s57881--375df48479a09de8657bd48331c4abd8.mat/MD5E-s57881--375df48479a09de8657bd48331c4abd8.mat

UM_2/sub-0050428/label/catROI_sub-0050428_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3k/Kv/MD5E-s188970--94ac7c3172363f55de2d49a5badc939b.xml/MD5E-s188970--94ac7c3172363f55de2d49a5badc939b.xml

UM_2/sub-0050428/label/catROIs_sub-0050428_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xk/2X/MD5E-s120242--00b44c8f265f079ec76832810fa967e3.mat/MD5E-s120242--00b44c8f265f079ec76832810fa967e3.mat

UM_2/sub-0050428/label/catROIs_sub-0050428_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Km/4p/MD5E-s332105--487b0d64570c23e65bd48b7a0b6c10fe.xml/MD5E-s332105--487b0d64570c23e65bd48b7a0b6c10fe.xml

UM_2/sub-0050428/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050428/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PQ/4z/MD5E-s127786--24235e0a3369b52292291bd31cd5d857.nii.gz/MD5E-s127786--24235e0a3369b52292291bd31cd5d857.nii.gz

UM_2/sub-0050428/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050428/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/1p/MD5E-s143432--86f579ef600a4a954d3d0677f997b477.nii.gz/MD5E-s143432--86f579ef600a4a954d3d0677f997b477.nii.gz

UM_2/sub-0050428/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050428/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gV/fV/MD5E-s179887--b3a9f511b2e093a212e4cff99da396ad.nii.gz/MD5E-s179887--b3a9f511b2e093a212e4cff99da396ad.nii.gz

UM_2/sub-0050428/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050428/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/kk/MD5E-s199865--2b2de44f4490f84dbbcc6faa12778f7d.nii.gz/MD5E-s199865--2b2de44f4490f84dbbcc6faa12778f7d.nii.gz

UM_2/sub-0050428/mri/Tian_Subcortex_S2_7T_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050428/mri/Tian_Subcortex_S2_7T_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gx/m7/MD5E-s17187--ca7b3d1bc41d5ecb7c31cbeaeb1f551b.nii.gz/MD5E-s17187--ca7b3d1bc41d5ecb7c31cbeaeb1f551b.nii.gz

UM_2/sub-0050428/mri/aal3_sub-0050428_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050428/mri/aal3_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/anatomy3_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050428/mri/anatomy3_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050428/mri/anon_misub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zX/2K/MD5E-s6224163--0a226d981a8eb36001fa52862aa243ac.nii.gz/MD5E-s6224163--0a226d981a8eb36001fa52862aa243ac.nii.gz

UM_2/sub-0050428/mri/anon_msub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/4K/MD5E-s6087524--debed5bd0e5d34886ba4655aa78c126a.nii.gz/MD5E-s6087524--debed5bd0e5d34886ba4655aa78c126a.nii.gz

UM_2/sub-0050428/mri/cat_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/xx/MD5E-s76115--95c57cc07fd232510549d47cfc28076b.nii.gz/MD5E-s76115--95c57cc07fd232510549d47cfc28076b.nii.gz

UM_2/sub-0050428/mri/cobra_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050428/mri/cobra_sub-0050428_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050428/mri/hammers_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050428/mri/hammers_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/ibsr_sub-0050428_T1w.csv

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UM_2/sub-0050428/mri/ibsr_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/it_sub-0050428_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/jv/MD5E-s283--1390e38286ef2e568674a57ca4c22fb9.mat/MD5E-s283--1390e38286ef2e568674a57ca4c22fb9.mat

UM_2/sub-0050428/mri/it_sub-0050428_T1w_rigid_reorient.mat

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UM_2/sub-0050428/mri/iy_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/julichbrain_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050428/mri/julichbrain_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/lpba40_sub-0050428_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050428/mri/lpba40_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/m0wp1sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/m0wp2sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/m0wp3sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/mori_sub-0050428_T1w.csv

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UM_2/sub-0050428/mri/mori_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/mwp1sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/mwp2sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/mwp3sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/neuromorphometrics_sub-0050428_T1w.csv

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UM_2/sub-0050428/mri/neuromorphometrics_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/p0sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/p1sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/p2sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/p3sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/rp1sub-0050428_T1w_affine.nii.gz

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UM_2/sub-0050428/mri/rp2sub-0050428_T1w_affine.nii.gz

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UM_2/sub-0050428/mri/rp3sub-0050428_T1w_affine.nii.gz

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UM_2/sub-0050428/mri/t_sub-0050428_T1w_affine_reorient.mat

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UM_2/sub-0050428/mri/t_sub-0050428_T1w_rigid_reorient.mat

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UM_2/sub-0050428/mri/thalamus_sub-0050428_T1w.csv

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UM_2/sub-0050428/mri/thalamus_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wj_sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wmisub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wmsub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wp0sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wp1sub-0050428_T1w.nii.gz

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UM_2/sub-0050428/mri/wp2sub-0050428_T1w.nii.gz

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