[DATALAD RUNCMD] Compute Leuven_1/sub-0050709

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050709/anat/sub-0050709_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050709"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050709/label/catROI_sub-0050709_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M7/xZ/MD5E-s61356--ea710251dc818966425fcf7941abf26f.mat/MD5E-s61356--ea710251dc818966425fcf7941abf26f.mat

Leuven_1/sub-0050709/label/catROI_sub-0050709_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jk/kf/MD5E-s188744--34a6afcf4ec32ce48ba18127a140d55a.xml/MD5E-s188744--34a6afcf4ec32ce48ba18127a140d55a.xml

Leuven_1/sub-0050709/label/catROIs_sub-0050709_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/21/m3/MD5E-s120028--303fb0e97cd61fb0b1cccdcda5ffa6c7.mat/MD5E-s120028--303fb0e97cd61fb0b1cccdcda5ffa6c7.mat

Leuven_1/sub-0050709/label/catROIs_sub-0050709_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pM/w4/MD5E-s332117--ebef40e39f2b40bac64e701e7d68c82d.xml/MD5E-s332117--ebef40e39f2b40bac64e701e7d68c82d.xml

Leuven_1/sub-0050709/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050709/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/Mq/MD5E-s184285--875cb3fb63efb202bf425de0456d6726.nii.gz/MD5E-s184285--875cb3fb63efb202bf425de0456d6726.nii.gz

Leuven_1/sub-0050709/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050709/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G0/Kk/MD5E-s205959--8d0f2a10038c568143d6d13fc239fedf.nii.gz/MD5E-s205959--8d0f2a10038c568143d6d13fc239fedf.nii.gz

Leuven_1/sub-0050709/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050709/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pQ/p8/MD5E-s261881--878dfae4f7336a269e63eaedf4e89c34.nii.gz/MD5E-s261881--878dfae4f7336a269e63eaedf4e89c34.nii.gz

Leuven_1/sub-0050709/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050709/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fz/Zg/MD5E-s291006--45fbd5f8eb128490db212ea77871ea57.nii.gz/MD5E-s291006--45fbd5f8eb128490db212ea77871ea57.nii.gz

Leuven_1/sub-0050709/mri/Tian_Subcortex_S2_7T_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050709/mri/Tian_Subcortex_S2_7T_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/p7/MD5E-s25620--b83e59506054021b775e977cbdf2eb8c.nii.gz/MD5E-s25620--b83e59506054021b775e977cbdf2eb8c.nii.gz

Leuven_1/sub-0050709/mri/aal3_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050709/mri/aal3_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050709/mri/anatomy3_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050709/mri/anatomy3_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J6/jg/MD5E-s146332--b909c9c677e54d563155dde9a28601b2.nii.gz/MD5E-s146332--b909c9c677e54d563155dde9a28601b2.nii.gz

Leuven_1/sub-0050709/mri/anon_misub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qz/xm/MD5E-s6061269--37f62ed8bbfa85d620d411d0b9471a8b.nii.gz/MD5E-s6061269--37f62ed8bbfa85d620d411d0b9471a8b.nii.gz

Leuven_1/sub-0050709/mri/anon_msub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/W2/MD5E-s12541903--50fbbdb0e631287eb5425908d4ea6f18.nii.gz/MD5E-s12541903--50fbbdb0e631287eb5425908d4ea6f18.nii.gz

Leuven_1/sub-0050709/mri/cat_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8P/zq/MD5E-s105665--54a754a6ed1c65d449e990d94b120cff.nii.gz/MD5E-s105665--54a754a6ed1c65d449e990d94b120cff.nii.gz

Leuven_1/sub-0050709/mri/cobra_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050709/mri/cobra_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fK/x2/MD5E-s48894--59a56cd7d0e8ea97bcff1786832c564d.nii.gz/MD5E-s48894--59a56cd7d0e8ea97bcff1786832c564d.nii.gz

Leuven_1/sub-0050709/mri/hammers_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050709/mri/hammers_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050709/mri/ibsr_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050709/mri/ibsr_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Q/6Q/MD5E-s164694--60ddbe20e292f5ea6a62a2fad99dd4b4.nii.gz/MD5E-s164694--60ddbe20e292f5ea6a62a2fad99dd4b4.nii.gz

Leuven_1/sub-0050709/mri/it_sub-0050709_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fJ/Gm/MD5E-s282--5992c3562cc5c3ad3f903e6916c9f923.mat/MD5E-s282--5992c3562cc5c3ad3f903e6916c9f923.mat

Leuven_1/sub-0050709/mri/it_sub-0050709_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7z/zm/MD5E-s282--76cc93f0e466cc32115692cf6266b25f.mat/MD5E-s282--76cc93f0e466cc32115692cf6266b25f.mat

Leuven_1/sub-0050709/mri/iy_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/Xm/MD5E-s43767959--196635497962d1301bd389f6131e38e8.nii.gz/MD5E-s43767959--196635497962d1301bd389f6131e38e8.nii.gz

Leuven_1/sub-0050709/mri/julichbrain_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050709/mri/julichbrain_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050709/mri/lpba40_sub-0050709_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050709/mri/lpba40_sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/m0wp1sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050709/mri/m0wp2sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/m0wp3sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/mori_sub-0050709_T1w.csv

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Leuven_1/sub-0050709/mri/mori_sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050709/mri/mwp1sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/mwp2sub-0050709_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/Qw/MD5E-s2329868--8fe2c2556da4092e50ebb945e1e4374c.nii.gz/MD5E-s2329868--8fe2c2556da4092e50ebb945e1e4374c.nii.gz

Leuven_1/sub-0050709/mri/mwp3sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/neuromorphometrics_sub-0050709_T1w.csv

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Leuven_1/sub-0050709/mri/neuromorphometrics_sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/p0sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/p1sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/p2sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/p3sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/rp1sub-0050709_T1w_affine.nii.gz

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Leuven_1/sub-0050709/mri/rp2sub-0050709_T1w_affine.nii.gz

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Leuven_1/sub-0050709/mri/rp3sub-0050709_T1w_affine.nii.gz

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Leuven_1/sub-0050709/mri/t_sub-0050709_T1w_affine_reorient.mat

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Leuven_1/sub-0050709/mri/t_sub-0050709_T1w_rigid_reorient.mat

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Leuven_1/sub-0050709/mri/thalamus_sub-0050709_T1w.csv

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Leuven_1/sub-0050709/mri/thalamus_sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wj_sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wmisub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wmsub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wp0sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wp1sub-0050709_T1w.nii.gz

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Leuven_1/sub-0050709/mri/wp2sub-0050709_T1w.nii.gz

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