[DATALAD RUNCMD] Compute UM_2/sub-0050418

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050418/anat/sub-0050418_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050418"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050418/label/catROI_sub-0050418_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/zK/MD5E-s58247--5f19a46d7b5936c9d8b502eb50971926.mat/MD5E-s58247--5f19a46d7b5936c9d8b502eb50971926.mat

UM_2/sub-0050418/label/catROI_sub-0050418_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/P7/MD5E-s188768--beb64406416dae0682c6c1222df5a53b.xml/MD5E-s188768--beb64406416dae0682c6c1222df5a53b.xml

UM_2/sub-0050418/label/catROIs_sub-0050418_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/fz/MD5E-s120077--2b428d4a85cf54757bccbd08a4d5283f.mat/MD5E-s120077--2b428d4a85cf54757bccbd08a4d5283f.mat

UM_2/sub-0050418/label/catROIs_sub-0050418_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xm/VV/MD5E-s332071--69a5238d71fbebb0481ac0814b410c7e.xml/MD5E-s332071--69a5238d71fbebb0481ac0814b410c7e.xml

UM_2/sub-0050418/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050418/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/q4/MD5E-s131274--70a5f927f67ce8d1c4caac2a6b4849fc.nii.gz/MD5E-s131274--70a5f927f67ce8d1c4caac2a6b4849fc.nii.gz

UM_2/sub-0050418/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050418/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PG/fk/MD5E-s147090--d78dcc3234e29970a29b412f76a1a4de.nii.gz/MD5E-s147090--d78dcc3234e29970a29b412f76a1a4de.nii.gz

UM_2/sub-0050418/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050418/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050418/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050418/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GP/mG/MD5E-s226189--5755424f98bfd75877122d01d37863d9.nii.gz/MD5E-s226189--5755424f98bfd75877122d01d37863d9.nii.gz

UM_2/sub-0050418/mri/Tian_Subcortex_S2_7T_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050418/mri/Tian_Subcortex_S2_7T_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/aal3_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/aal3_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/anatomy3_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/anatomy3_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050418/mri/anon_misub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/12/MD5E-s3629478--f83fe2cfc6391c3af059baa665d368b2.nii.gz/MD5E-s3629478--f83fe2cfc6391c3af059baa665d368b2.nii.gz

UM_2/sub-0050418/mri/anon_msub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050418/mri/cat_sub-0050418_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pv/pP/MD5E-s74951--79d848fc255f820ca4d673cef5d510e4.nii.gz/MD5E-s74951--79d848fc255f820ca4d673cef5d510e4.nii.gz

UM_2/sub-0050418/mri/cobra_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050418/mri/cobra_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/hammers_sub-0050418_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050418/mri/hammers_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/ibsr_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/ibsr_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/it_sub-0050418_T1w_affine_reorient.mat

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+../../../.git/annex/objects/zX/zf/MD5E-s284--64643fc2f996bd93c055e5dcbb3e7487.mat/MD5E-s284--64643fc2f996bd93c055e5dcbb3e7487.mat

UM_2/sub-0050418/mri/it_sub-0050418_T1w_rigid_reorient.mat

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UM_2/sub-0050418/mri/iy_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/julichbrain_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/julichbrain_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/lpba40_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/lpba40_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/m0wp1sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/m0wp2sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/m0wp3sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/mori_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/mori_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/mwp1sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/mwp2sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/mwp3sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/neuromorphometrics_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/neuromorphometrics_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/p0sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/p1sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/p2sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/p3sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/rp1sub-0050418_T1w_affine.nii.gz

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UM_2/sub-0050418/mri/rp2sub-0050418_T1w_affine.nii.gz

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UM_2/sub-0050418/mri/rp3sub-0050418_T1w_affine.nii.gz

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UM_2/sub-0050418/mri/t_sub-0050418_T1w_affine_reorient.mat

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UM_2/sub-0050418/mri/t_sub-0050418_T1w_rigid_reorient.mat

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UM_2/sub-0050418/mri/thalamus_sub-0050418_T1w.csv

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UM_2/sub-0050418/mri/thalamus_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wj_sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wmisub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wmsub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wp0sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wp1sub-0050418_T1w.nii.gz

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UM_2/sub-0050418/mri/wp2sub-0050418_T1w.nii.gz

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