[DATALAD RUNCMD] Compute CMU_a/sub-0050653

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050653/anat/sub-0050653_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050653"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050653/label/catROI_sub-0050653_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/KP/MD5E-s58179--d200e0c0b0e72f1bdf9181f9c370240f.mat/MD5E-s58179--d200e0c0b0e72f1bdf9181f9c370240f.mat

CMU_a/sub-0050653/label/catROI_sub-0050653_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wm/wZ/MD5E-s188373--c43544e36ea97ff2e86d59430611b166.xml/MD5E-s188373--c43544e36ea97ff2e86d59430611b166.xml

CMU_a/sub-0050653/label/catROIs_sub-0050653_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jk/1M/MD5E-s120103--0305b3c910493ed464a4c18de797c185.mat/MD5E-s120103--0305b3c910493ed464a4c18de797c185.mat

CMU_a/sub-0050653/label/catROIs_sub-0050653_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4W/MM/MD5E-s332060--b4baffb8b6bfe6e502e95ad1a76b7f6e.xml/MD5E-s332060--b4baffb8b6bfe6e502e95ad1a76b7f6e.xml

CMU_a/sub-0050653/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050653/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KZ/2v/MD5E-s183628--96596188d8fb0530943c9be3e143d47b.nii.gz/MD5E-s183628--96596188d8fb0530943c9be3e143d47b.nii.gz

CMU_a/sub-0050653/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050653/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/J1/MD5E-s207633--3125d667e2f5d40902c7f0bd310231a5.nii.gz/MD5E-s207633--3125d667e2f5d40902c7f0bd310231a5.nii.gz

CMU_a/sub-0050653/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050653/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/23/9f/MD5E-s280006--97e570d3ce4b767651259e9cac48a95f.nii.gz/MD5E-s280006--97e570d3ce4b767651259e9cac48a95f.nii.gz

CMU_a/sub-0050653/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050653/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/z9/MD5E-s311898--e0fd44e6c416175c77535ddf509bfde9.nii.gz/MD5E-s311898--e0fd44e6c416175c77535ddf509bfde9.nii.gz

CMU_a/sub-0050653/mri/Tian_Subcortex_S2_7T_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050653/mri/Tian_Subcortex_S2_7T_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p0/K1/MD5E-s26012--9aa8e1f4c283f1c071e76f7462e52d29.nii.gz/MD5E-s26012--9aa8e1f4c283f1c071e76f7462e52d29.nii.gz

CMU_a/sub-0050653/mri/aal3_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050653/mri/aal3_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/9g/MD5E-s211513--94e2ca5a59975525307f7079dca9e1f7.nii.gz/MD5E-s211513--94e2ca5a59975525307f7079dca9e1f7.nii.gz

CMU_a/sub-0050653/mri/anatomy3_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050653/mri/anatomy3_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f5/p2/MD5E-s152530--9bc425c06cbf0b18a617b1ab8fe45184.nii.gz/MD5E-s152530--9bc425c06cbf0b18a617b1ab8fe45184.nii.gz

CMU_a/sub-0050653/mri/anon_misub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/pm/MD5E-s9611278--6f04483f61b5ec6ffc7482f2c966ab0e.nii.gz/MD5E-s9611278--6f04483f61b5ec6ffc7482f2c966ab0e.nii.gz

CMU_a/sub-0050653/mri/anon_msub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GV/xJ/MD5E-s10487890--1b93e9a9e5750e2a1f287f68b1930924.nii.gz/MD5E-s10487890--1b93e9a9e5750e2a1f287f68b1930924.nii.gz

CMU_a/sub-0050653/mri/cat_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/F5/MD5E-s109672--84405e6383dd264322718162ca113ef5.nii.gz/MD5E-s109672--84405e6383dd264322718162ca113ef5.nii.gz

CMU_a/sub-0050653/mri/cobra_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050653/mri/cobra_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/18/FX/MD5E-s52893--3b64ee7361a8df51f5f241a5152c62d3.nii.gz/MD5E-s52893--3b64ee7361a8df51f5f241a5152c62d3.nii.gz

CMU_a/sub-0050653/mri/hammers_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050653/mri/hammers_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8G/K5/MD5E-s165562--5f90543e4f2c7e2001793457a235a706.nii.gz/MD5E-s165562--5f90543e4f2c7e2001793457a235a706.nii.gz

CMU_a/sub-0050653/mri/ibsr_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050653/mri/ibsr_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/79/MD5E-s174491--c3332a9808a93aa0a264dc26144d3ada.nii.gz/MD5E-s174491--c3332a9808a93aa0a264dc26144d3ada.nii.gz

CMU_a/sub-0050653/mri/it_sub-0050653_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/75/q7/MD5E-s283--cb253c921bf717755f03e8dbffb3e2b3.mat/MD5E-s283--cb253c921bf717755f03e8dbffb3e2b3.mat

CMU_a/sub-0050653/mri/it_sub-0050653_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0K/2j/MD5E-s285--ccd3362adddba2dca267b9a67fef8055.mat/MD5E-s285--ccd3362adddba2dca267b9a67fef8055.mat

CMU_a/sub-0050653/mri/iy_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w8/Fj/MD5E-s53477776--b97598e39fe85c7f21690be7e447cb98.nii.gz/MD5E-s53477776--b97598e39fe85c7f21690be7e447cb98.nii.gz

CMU_a/sub-0050653/mri/julichbrain_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050653/mri/julichbrain_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/3w/MD5E-s222612--0297f9be63c82c8ec746f33708bcb7ab.nii.gz/MD5E-s222612--0297f9be63c82c8ec746f33708bcb7ab.nii.gz

CMU_a/sub-0050653/mri/lpba40_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050653/mri/lpba40_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5k/ww/MD5E-s160946--d041f2db251c0e6cb6f9d5bd55927884.nii.gz/MD5E-s160946--d041f2db251c0e6cb6f9d5bd55927884.nii.gz

CMU_a/sub-0050653/mri/m0wp1sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/34/MD5E-s2570267--ee1e9a2a61df4b2b9f00c1833e33baa1.nii.gz/MD5E-s2570267--ee1e9a2a61df4b2b9f00c1833e33baa1.nii.gz

CMU_a/sub-0050653/mri/m0wp2sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G0/G7/MD5E-s2332961--f83c25ed4803c807daf5b15a8f5eec34.nii.gz/MD5E-s2332961--f83c25ed4803c807daf5b15a8f5eec34.nii.gz

CMU_a/sub-0050653/mri/m0wp3sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8m/Xj/MD5E-s2533552--63acfc0eb63e0960f898708ac370847d.nii.gz/MD5E-s2533552--63acfc0eb63e0960f898708ac370847d.nii.gz

CMU_a/sub-0050653/mri/mori_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_a/sub-0050653/mri/mori_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/0j/MD5E-s193725--3e5fd300e4b920d4fb40a660b73aff3f.nii.gz/MD5E-s193725--3e5fd300e4b920d4fb40a660b73aff3f.nii.gz

CMU_a/sub-0050653/mri/mwp1sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/50/zW/MD5E-s2568798--4ded65a03f30a06e6427d6a5c84137fc.nii.gz/MD5E-s2568798--4ded65a03f30a06e6427d6a5c84137fc.nii.gz

CMU_a/sub-0050653/mri/mwp2sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/GJ/MD5E-s2331338--270526a29604b30951c73bb293ff9792.nii.gz/MD5E-s2331338--270526a29604b30951c73bb293ff9792.nii.gz

CMU_a/sub-0050653/mri/mwp3sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5J/7X/MD5E-s2529813--e7d410a4ecd1042c547e96c46a19dd83.nii.gz/MD5E-s2529813--e7d410a4ecd1042c547e96c46a19dd83.nii.gz

CMU_a/sub-0050653/mri/neuromorphometrics_sub-0050653_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050653/mri/neuromorphometrics_sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/G6/MD5E-s224558--5407b002039596b406058122959511b8.nii.gz/MD5E-s224558--5407b002039596b406058122959511b8.nii.gz

CMU_a/sub-0050653/mri/p0sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mk/Px/MD5E-s758623--da3b66948362040d1bace5f30870a21b.nii.gz/MD5E-s758623--da3b66948362040d1bace5f30870a21b.nii.gz

CMU_a/sub-0050653/mri/p1sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050653/mri/p2sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/vg/MD5E-s531591--736b2801af9891c7bf0c13088b91a3f1.nii.gz/MD5E-s531591--736b2801af9891c7bf0c13088b91a3f1.nii.gz

CMU_a/sub-0050653/mri/p3sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2P/PM/MD5E-s458186--750787db9da1a1511abe7024c499adca.nii.gz/MD5E-s458186--750787db9da1a1511abe7024c499adca.nii.gz

CMU_a/sub-0050653/mri/rp1sub-0050653_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/02/Z5/MD5E-s446455--4bb913c98a5ab88e6e32636d4721743b.nii.gz/MD5E-s446455--4bb913c98a5ab88e6e32636d4721743b.nii.gz

CMU_a/sub-0050653/mri/rp2sub-0050653_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7V/4V/MD5E-s310681--c24fa10a7a39a949fe308e1417757dab.nii.gz/MD5E-s310681--c24fa10a7a39a949fe308e1417757dab.nii.gz

CMU_a/sub-0050653/mri/rp3sub-0050653_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/22/9F/MD5E-s288426--5719996f5c13188f2126b77530df74dc.nii.gz/MD5E-s288426--5719996f5c13188f2126b77530df74dc.nii.gz

CMU_a/sub-0050653/mri/t_sub-0050653_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/7m/MD5E-s284--5b612197b6ca3a2ded885b9cad88a0b8.mat/MD5E-s284--5b612197b6ca3a2ded885b9cad88a0b8.mat

CMU_a/sub-0050653/mri/t_sub-0050653_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/73/V0/MD5E-s285--36f42ca69f19407386b9bc03635aac99.mat/MD5E-s285--36f42ca69f19407386b9bc03635aac99.mat

CMU_a/sub-0050653/mri/thalamus_sub-0050653_T1w.csv

@@ -0,0 +1 @@
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CMU_a/sub-0050653/mri/thalamus_sub-0050653_T1w.nii.gz

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CMU_a/sub-0050653/mri/wj_sub-0050653_T1w.nii.gz

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CMU_a/sub-0050653/mri/wmisub-0050653_T1w.nii.gz

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CMU_a/sub-0050653/mri/wmsub-0050653_T1w.nii.gz

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CMU_a/sub-0050653/mri/wp0sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050653/mri/wp1sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050653/mri/wp2sub-0050653_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050653/mri/wp3sub-0050653_T1w.nii.gz

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