[DATALAD RUNCMD] Compute Olin/sub-0050134

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050134/anat/sub-0050134_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050134"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050134/label/catROI_sub-0050134_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0K/xJ/MD5E-s61330--550b065326ca9d6830760354885354d5.mat/MD5E-s61330--550b065326ca9d6830760354885354d5.mat

Olin/sub-0050134/label/catROI_sub-0050134_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fp/0w/MD5E-s188808--995d78816a45745eb08d93ed316bdf1f.xml/MD5E-s188808--995d78816a45745eb08d93ed316bdf1f.xml

Olin/sub-0050134/label/catROIs_sub-0050134_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/56/vz/MD5E-s120195--e644f14b80f164fa9dda7251d0c66086.mat/MD5E-s120195--e644f14b80f164fa9dda7251d0c66086.mat

Olin/sub-0050134/label/catROIs_sub-0050134_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/Fj/MD5E-s332166--8316d6c3beb8deedb0a4e9a2039c9751.xml/MD5E-s332166--8316d6c3beb8deedb0a4e9a2039c9751.xml

Olin/sub-0050134/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050134/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/Fp/MD5E-s179750--ed37547ce222904912f2eef7bfacf3ad.nii.gz/MD5E-s179750--ed37547ce222904912f2eef7bfacf3ad.nii.gz

Olin/sub-0050134/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050134/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/62/MD5E-s200414--f58e3b3cac8a4a6cc34013479a185bc3.nii.gz/MD5E-s200414--f58e3b3cac8a4a6cc34013479a185bc3.nii.gz

Olin/sub-0050134/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050134/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GF/vv/MD5E-s258236--990e087632cb6312500c3774ffa30bb1.nii.gz/MD5E-s258236--990e087632cb6312500c3774ffa30bb1.nii.gz

Olin/sub-0050134/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050134/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xj/qZ/MD5E-s288569--36963897005a7e0cfc56e1a04dea0d97.nii.gz/MD5E-s288569--36963897005a7e0cfc56e1a04dea0d97.nii.gz

Olin/sub-0050134/mri/Tian_Subcortex_S2_7T_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050134/mri/Tian_Subcortex_S2_7T_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PM/m8/MD5E-s24473--27947f69676ef599c560fdab4c7204aa.nii.gz/MD5E-s24473--27947f69676ef599c560fdab4c7204aa.nii.gz

Olin/sub-0050134/mri/aal3_sub-0050134_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050134/mri/aal3_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050134/mri/anatomy3_sub-0050134_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050134/mri/anatomy3_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MV/G7/MD5E-s146575--500b573c198a245999d7b5392efefcde.nii.gz/MD5E-s146575--500b573c198a245999d7b5392efefcde.nii.gz

Olin/sub-0050134/mri/anon_misub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050134/mri/anon_msub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/Jw/MD5E-s9514682--fd7109b6c7402bb56cd0cbe9b812e170.nii.gz/MD5E-s9514682--fd7109b6c7402bb56cd0cbe9b812e170.nii.gz

Olin/sub-0050134/mri/cat_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/WG/MD5E-s104516--17c04f6b7aadce06b7d01eef5ca837fe.nii.gz/MD5E-s104516--17c04f6b7aadce06b7d01eef5ca837fe.nii.gz

Olin/sub-0050134/mri/cobra_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050134/mri/cobra_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gg/Z8/MD5E-s49318--d659df393488935225cd518eedd4800d.nii.gz/MD5E-s49318--d659df393488935225cd518eedd4800d.nii.gz

Olin/sub-0050134/mri/hammers_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050134/mri/hammers_sub-0050134_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x1/46/MD5E-s154750--964b94df79d51f144d61aa3a760c585b.nii.gz/MD5E-s154750--964b94df79d51f144d61aa3a760c585b.nii.gz

Olin/sub-0050134/mri/ibsr_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050134/mri/ibsr_sub-0050134_T1w.nii.gz

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+../../../.git/annex/objects/FZ/0q/MD5E-s164757--c74903841b0f5d2a394dc4800e8f0c4f.nii.gz/MD5E-s164757--c74903841b0f5d2a394dc4800e8f0c4f.nii.gz

Olin/sub-0050134/mri/it_sub-0050134_T1w_affine_reorient.mat

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Olin/sub-0050134/mri/it_sub-0050134_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5J/WP/MD5E-s282--4f3b1c85b930ffd3b1716d9241935d8d.mat/MD5E-s282--4f3b1c85b930ffd3b1716d9241935d8d.mat

Olin/sub-0050134/mri/iy_sub-0050134_T1w.nii.gz

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+../../../.git/annex/objects/MF/p1/MD5E-s46761150--2ad987d541152547d3d02169ff5f6ebf.nii.gz/MD5E-s46761150--2ad987d541152547d3d02169ff5f6ebf.nii.gz

Olin/sub-0050134/mri/julichbrain_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050134/mri/julichbrain_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/lpba40_sub-0050134_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050134/mri/lpba40_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/m0wp1sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/m0wp2sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/m0wp3sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/mori_sub-0050134_T1w.csv

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Olin/sub-0050134/mri/mori_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/mwp1sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/mwp2sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/mwp3sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/neuromorphometrics_sub-0050134_T1w.csv

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Olin/sub-0050134/mri/neuromorphometrics_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/p0sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/p1sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/p2sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/p3sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/rp1sub-0050134_T1w_affine.nii.gz

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Olin/sub-0050134/mri/rp2sub-0050134_T1w_affine.nii.gz

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Olin/sub-0050134/mri/rp3sub-0050134_T1w_affine.nii.gz

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Olin/sub-0050134/mri/t_sub-0050134_T1w_affine_reorient.mat

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Olin/sub-0050134/mri/t_sub-0050134_T1w_rigid_reorient.mat

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Olin/sub-0050134/mri/thalamus_sub-0050134_T1w.csv

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Olin/sub-0050134/mri/thalamus_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wj_sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wmisub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wmsub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wp0sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wp1sub-0050134_T1w.nii.gz

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Olin/sub-0050134/mri/wp2sub-0050134_T1w.nii.gz

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