[DATALAD RUNCMD] Compute Pitt/sub-0050011

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050011/anat/sub-0050011_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050011"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050011/label/catROI_sub-0050011_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/6X/MD5E-s61366--0597a67a7dfeb362d6b6df35c423ba9c.mat/MD5E-s61366--0597a67a7dfeb362d6b6df35c423ba9c.mat

Pitt/sub-0050011/label/catROI_sub-0050011_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/vK/MD5E-s188614--872280c98606cc4c80568cc912c5f1f4.xml/MD5E-s188614--872280c98606cc4c80568cc912c5f1f4.xml

Pitt/sub-0050011/label/catROIs_sub-0050011_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/vM/MD5E-s120074--4150c0dd454afcab93836e672ea7facc.mat/MD5E-s120074--4150c0dd454afcab93836e672ea7facc.mat

Pitt/sub-0050011/label/catROIs_sub-0050011_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F7/X2/MD5E-s332112--db08c5ebd78b06ed3418ddb1218916cc.xml/MD5E-s332112--db08c5ebd78b06ed3418ddb1218916cc.xml

Pitt/sub-0050011/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050011/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fG/Pg/MD5E-s174263--f7f277b1374d508294b41d283d2a34af.nii.gz/MD5E-s174263--f7f277b1374d508294b41d283d2a34af.nii.gz

Pitt/sub-0050011/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050011/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qj/X4/MD5E-s195341--c1c26aa6acf29f79f4142eafe0c9d3b9.nii.gz/MD5E-s195341--c1c26aa6acf29f79f4142eafe0c9d3b9.nii.gz

Pitt/sub-0050011/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050011/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pW/K9/MD5E-s264485--b9d5fd7adc0139bce51cfe5e10b6957a.nii.gz/MD5E-s264485--b9d5fd7adc0139bce51cfe5e10b6957a.nii.gz

Pitt/sub-0050011/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050011/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/85/QJ/MD5E-s294326--0395476bd0a3cd51bc7b47966d4d5226.nii.gz/MD5E-s294326--0395476bd0a3cd51bc7b47966d4d5226.nii.gz

Pitt/sub-0050011/mri/Tian_Subcortex_S2_7T_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050011/mri/Tian_Subcortex_S2_7T_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/z6/MD5E-s25319--7c5ef6d324731e8de16c72263754a227.nii.gz/MD5E-s25319--7c5ef6d324731e8de16c72263754a227.nii.gz

Pitt/sub-0050011/mri/aal3_sub-0050011_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050011/mri/aal3_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/anatomy3_sub-0050011_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050011/mri/anatomy3_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/49/5Z/MD5E-s141572--96fc6bcb45e3a5fbfe8585864668146d.nii.gz/MD5E-s141572--96fc6bcb45e3a5fbfe8585864668146d.nii.gz

Pitt/sub-0050011/mri/anon_misub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050011/mri/anon_msub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/69/5Z/MD5E-s13619603--acfcd36cef5a5e1f7567b18762c20ffe.nii.gz/MD5E-s13619603--acfcd36cef5a5e1f7567b18762c20ffe.nii.gz

Pitt/sub-0050011/mri/cat_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VJ/Kj/MD5E-s108243--98022eb3659889ee2158675ab2fb06cb.nii.gz/MD5E-s108243--98022eb3659889ee2158675ab2fb06cb.nii.gz

Pitt/sub-0050011/mri/cobra_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050011/mri/cobra_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/hammers_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050011/mri/hammers_sub-0050011_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050011/mri/ibsr_sub-0050011_T1w.csv

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Pitt/sub-0050011/mri/ibsr_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/it_sub-0050011_T1w_affine_reorient.mat

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Pitt/sub-0050011/mri/it_sub-0050011_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gx/k9/MD5E-s283--9431d5a66d3ae996b40d08fb24f6a872.mat/MD5E-s283--9431d5a66d3ae996b40d08fb24f6a872.mat

Pitt/sub-0050011/mri/iy_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/julichbrain_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050011/mri/julichbrain_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/lpba40_sub-0050011_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Pitt/sub-0050011/mri/lpba40_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/m0wp1sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/m0wp2sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/m0wp3sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/mori_sub-0050011_T1w.csv

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Pitt/sub-0050011/mri/mori_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/mwp1sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/mwp2sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/mwp3sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/neuromorphometrics_sub-0050011_T1w.csv

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Pitt/sub-0050011/mri/neuromorphometrics_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/p0sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/p1sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/p2sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/p3sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/rp1sub-0050011_T1w_affine.nii.gz

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Pitt/sub-0050011/mri/rp2sub-0050011_T1w_affine.nii.gz

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Pitt/sub-0050011/mri/rp3sub-0050011_T1w_affine.nii.gz

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Pitt/sub-0050011/mri/t_sub-0050011_T1w_affine_reorient.mat

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Pitt/sub-0050011/mri/t_sub-0050011_T1w_rigid_reorient.mat

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Pitt/sub-0050011/mri/thalamus_sub-0050011_T1w.csv

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Pitt/sub-0050011/mri/thalamus_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wj_sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wmisub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wmsub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wp0sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wp1sub-0050011_T1w.nii.gz

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Pitt/sub-0050011/mri/wp2sub-0050011_T1w.nii.gz

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