[DATALAD RUNCMD] Compute MaxMun_a/sub-0051607

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_a/sub-0051607/anat/sub-0051607_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_a/sub-0051607"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_a/sub-0051607/label/catROI_sub-0051607_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/K9/MD5E-s58015--c5510d9cbdd5f00bc5248c7943e2ba02.mat/MD5E-s58015--c5510d9cbdd5f00bc5248c7943e2ba02.mat

MaxMun_a/sub-0051607/label/catROI_sub-0051607_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/29/Vv/MD5E-s188601--abe9a12beb005ae575270e54d2909f2b.xml/MD5E-s188601--abe9a12beb005ae575270e54d2909f2b.xml

MaxMun_a/sub-0051607/label/catROIs_sub-0051607_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/Mz/MD5E-s120078--4192fce4e3367a58c819018a0300da32.mat/MD5E-s120078--4192fce4e3367a58c819018a0300da32.mat

MaxMun_a/sub-0051607/label/catROIs_sub-0051607_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/29/zJ/MD5E-s332129--b56c263ce84095599809bb9e85967f43.xml/MD5E-s332129--b56c263ce84095599809bb9e85967f43.xml

MaxMun_a/sub-0051607/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_a/sub-0051607/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/64/MD5E-s173310--16de4bc5881cf441a38633939541f03e.nii.gz/MD5E-s173310--16de4bc5881cf441a38633939541f03e.nii.gz

MaxMun_a/sub-0051607/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_a/sub-0051607/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9p/w9/MD5E-s192976--cc2e5cf9805fe9fe538d589de1e6dfe5.nii.gz/MD5E-s192976--cc2e5cf9805fe9fe538d589de1e6dfe5.nii.gz

MaxMun_a/sub-0051607/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_a/sub-0051607/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pv/95/MD5E-s260609--63eb59706a57f08783aa82f3aa5c544f.nii.gz/MD5E-s260609--63eb59706a57f08783aa82f3aa5c544f.nii.gz

MaxMun_a/sub-0051607/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_a/sub-0051607/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PG/wk/MD5E-s287819--7f192a6bfdd54accbe9631dbb3ac6940.nii.gz/MD5E-s287819--7f192a6bfdd54accbe9631dbb3ac6940.nii.gz

MaxMun_a/sub-0051607/mri/Tian_Subcortex_S2_7T_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_a/sub-0051607/mri/Tian_Subcortex_S2_7T_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zZ/w0/MD5E-s23855--6ecdd38c2f1e52c443338d033aa0ddca.nii.gz/MD5E-s23855--6ecdd38c2f1e52c443338d033aa0ddca.nii.gz

MaxMun_a/sub-0051607/mri/aal3_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_a/sub-0051607/mri/aal3_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pm/Q3/MD5E-s198449--c65e909bade8ef8ea874538f43463943.nii.gz/MD5E-s198449--c65e909bade8ef8ea874538f43463943.nii.gz

MaxMun_a/sub-0051607/mri/anatomy3_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_a/sub-0051607/mri/anatomy3_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k2/qP/MD5E-s138260--9ca6a3249c5344823a15a9c47a6bbd1f.nii.gz/MD5E-s138260--9ca6a3249c5344823a15a9c47a6bbd1f.nii.gz

MaxMun_a/sub-0051607/mri/anon_misub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/VZ/MD5E-s5164556--90a13e7c7909682fb782a96cea4a23c8.nii.gz/MD5E-s5164556--90a13e7c7909682fb782a96cea4a23c8.nii.gz

MaxMun_a/sub-0051607/mri/anon_msub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xf/MM/MD5E-s8895649--317b4edfc28ef84e70785492aea76b0f.nii.gz/MD5E-s8895649--317b4edfc28ef84e70785492aea76b0f.nii.gz

MaxMun_a/sub-0051607/mri/cat_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9p/pV/MD5E-s104989--bdd44d33da9e9e56b85d33b77d347396.nii.gz/MD5E-s104989--bdd44d33da9e9e56b85d33b77d347396.nii.gz

MaxMun_a/sub-0051607/mri/cobra_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_a/sub-0051607/mri/cobra_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MZ/1v/MD5E-s50332--62c4c62cf0803b511dcaad1abe981568.nii.gz/MD5E-s50332--62c4c62cf0803b511dcaad1abe981568.nii.gz

MaxMun_a/sub-0051607/mri/hammers_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_a/sub-0051607/mri/hammers_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/gv/MD5E-s156193--8ec3af8c4f5a002cadc89338da7c4f0d.nii.gz/MD5E-s156193--8ec3af8c4f5a002cadc89338da7c4f0d.nii.gz

MaxMun_a/sub-0051607/mri/ibsr_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_a/sub-0051607/mri/ibsr_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/39/Q4/MD5E-s162507--1db336fbec38f2742b7f5575687cd1cb.nii.gz/MD5E-s162507--1db336fbec38f2742b7f5575687cd1cb.nii.gz

MaxMun_a/sub-0051607/mri/it_sub-0051607_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F1/85/MD5E-s284--a958180fc382a5697bae8a6e50e59fbd.mat/MD5E-s284--a958180fc382a5697bae8a6e50e59fbd.mat

MaxMun_a/sub-0051607/mri/it_sub-0051607_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/1m/MD5E-s283--e3e2bd166abb4afc5769e76bb130a878.mat/MD5E-s283--e3e2bd166abb4afc5769e76bb130a878.mat

MaxMun_a/sub-0051607/mri/iy_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/27/q1/MD5E-s50144470--ab73081e56bb91c623999c2e0f517f74.nii.gz/MD5E-s50144470--ab73081e56bb91c623999c2e0f517f74.nii.gz

MaxMun_a/sub-0051607/mri/julichbrain_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_a/sub-0051607/mri/julichbrain_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/JV/MD5E-s208829--286d720657a2d792cf85d1e8ae5b0aef.nii.gz/MD5E-s208829--286d720657a2d792cf85d1e8ae5b0aef.nii.gz

MaxMun_a/sub-0051607/mri/lpba40_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_a/sub-0051607/mri/lpba40_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5K/W5/MD5E-s151806--9f9679330b17f1a25a53ce5b4f562d66.nii.gz/MD5E-s151806--9f9679330b17f1a25a53ce5b4f562d66.nii.gz

MaxMun_a/sub-0051607/mri/m0wp1sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/xw/MD5E-s2582370--ba427546a4aedcf034a68196961cfdab.nii.gz/MD5E-s2582370--ba427546a4aedcf034a68196961cfdab.nii.gz

MaxMun_a/sub-0051607/mri/m0wp2sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pZ/Mj/MD5E-s2301014--99f52ed859b65a5dbf9cd5eb8243786b.nii.gz/MD5E-s2301014--99f52ed859b65a5dbf9cd5eb8243786b.nii.gz

MaxMun_a/sub-0051607/mri/m0wp3sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qx/qP/MD5E-s2530294--da7eb43c98421e02bb3124092f22b376.nii.gz/MD5E-s2530294--da7eb43c98421e02bb3124092f22b376.nii.gz

MaxMun_a/sub-0051607/mri/mori_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_a/sub-0051607/mri/mori_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/98/8g/MD5E-s184804--31910ea79b1167ddfc35fa03d3955818.nii.gz/MD5E-s184804--31910ea79b1167ddfc35fa03d3955818.nii.gz

MaxMun_a/sub-0051607/mri/mwp1sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MW/fZ/MD5E-s2582387--3dc92c941c570c1789a792cb67b54c51.nii.gz/MD5E-s2582387--3dc92c941c570c1789a792cb67b54c51.nii.gz

MaxMun_a/sub-0051607/mri/mwp2sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kx/PM/MD5E-s2298721--d4024dce3f86d5718458d6f50ace7ce4.nii.gz/MD5E-s2298721--d4024dce3f86d5718458d6f50ace7ce4.nii.gz

MaxMun_a/sub-0051607/mri/mwp3sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wQ/w3/MD5E-s2526328--c49dd5abd65bece061a495d3ef103e1a.nii.gz/MD5E-s2526328--c49dd5abd65bece061a495d3ef103e1a.nii.gz

MaxMun_a/sub-0051607/mri/neuromorphometrics_sub-0051607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_a/sub-0051607/mri/neuromorphometrics_sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Q/Jm/MD5E-s210934--b6508231b12eb4d0ccad3a35138c8d2b.nii.gz/MD5E-s210934--b6508231b12eb4d0ccad3a35138c8d2b.nii.gz

MaxMun_a/sub-0051607/mri/p0sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/J7/MD5E-s694348--65b4e74490072f24dc1d3be28179cd8a.nii.gz/MD5E-s694348--65b4e74490072f24dc1d3be28179cd8a.nii.gz

MaxMun_a/sub-0051607/mri/p1sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GP/4q/MD5E-s738331--1c61f391707f30dbd99d4b9e4958ead3.nii.gz/MD5E-s738331--1c61f391707f30dbd99d4b9e4958ead3.nii.gz

MaxMun_a/sub-0051607/mri/p2sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PZ/8q/MD5E-s477864--7f8617f55f789f69c616c9a4622cc0a2.nii.gz/MD5E-s477864--7f8617f55f789f69c616c9a4622cc0a2.nii.gz

MaxMun_a/sub-0051607/mri/p3sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/rp1sub-0051607_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/14/5m/MD5E-s445373--5dce234b77d04ab8793e8f97b76b3e1b.nii.gz/MD5E-s445373--5dce234b77d04ab8793e8f97b76b3e1b.nii.gz

MaxMun_a/sub-0051607/mri/rp2sub-0051607_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QF/00/MD5E-s302415--49394677780342d6254f485fdf16a4b0.nii.gz/MD5E-s302415--49394677780342d6254f485fdf16a4b0.nii.gz

MaxMun_a/sub-0051607/mri/rp3sub-0051607_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/2M/MD5E-s287011--d5a9e72d3d0305d1a41431d2f568c089.nii.gz/MD5E-s287011--d5a9e72d3d0305d1a41431d2f568c089.nii.gz

MaxMun_a/sub-0051607/mri/t_sub-0051607_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/t_sub-0051607_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zw/G6/MD5E-s283--abfc65e6d8180f3d1c98b7ccf81e2046.mat/MD5E-s283--abfc65e6d8180f3d1c98b7ccf81e2046.mat

MaxMun_a/sub-0051607/mri/thalamus_sub-0051607_T1w.csv

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/thalamus_sub-0051607_T1w.nii.gz

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MaxMun_a/sub-0051607/mri/wj_sub-0051607_T1w.nii.gz

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MaxMun_a/sub-0051607/mri/wmisub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/wmsub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/wp0sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/wp1sub-0051607_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051607/mri/wp2sub-0051607_T1w.nii.gz

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