[DATALAD RUNCMD] Compute OHSU/sub-0050145

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050145/anat/sub-0050145_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050145"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050145/label/catROI_sub-0050145_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/80/w2/MD5E-s61324--73d0dbf5c9323914935a7bd542e8854e.mat/MD5E-s61324--73d0dbf5c9323914935a7bd542e8854e.mat

OHSU/sub-0050145/label/catROI_sub-0050145_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/8P/MD5E-s188739--96508dbe9fb4ee7e9e7b7e93dc48659f.xml/MD5E-s188739--96508dbe9fb4ee7e9e7b7e93dc48659f.xml

OHSU/sub-0050145/label/catROIs_sub-0050145_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VP/pw/MD5E-s120073--70cc2b409636d80b6c2843db274142a0.mat/MD5E-s120073--70cc2b409636d80b6c2843db274142a0.mat

OHSU/sub-0050145/label/catROIs_sub-0050145_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/F9/MD5E-s332040--14936f13c36f258e350cf590b915c4c6.xml/MD5E-s332040--14936f13c36f258e350cf590b915c4c6.xml

OHSU/sub-0050145/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050145/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MX/Fp/MD5E-s162794--5e87189ebb31b19f200c04946f63a428.nii.gz/MD5E-s162794--5e87189ebb31b19f200c04946f63a428.nii.gz

OHSU/sub-0050145/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050145/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/91/1V/MD5E-s184282--5b374e466ce3bc250608383f519a9b83.nii.gz/MD5E-s184282--5b374e466ce3bc250608383f519a9b83.nii.gz

OHSU/sub-0050145/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050145/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/00/QM/MD5E-s245173--6344e2e141e29524ee29bd56dcecb3d1.nii.gz/MD5E-s245173--6344e2e141e29524ee29bd56dcecb3d1.nii.gz

OHSU/sub-0050145/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050145/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FG/F4/MD5E-s275812--79d28404cf2fc6593b5ff904a1936d43.nii.gz/MD5E-s275812--79d28404cf2fc6593b5ff904a1936d43.nii.gz

OHSU/sub-0050145/mri/Tian_Subcortex_S2_7T_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050145/mri/Tian_Subcortex_S2_7T_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/Vz/MD5E-s20098--698c01b2242ec9619021231bcaa0a42e.nii.gz/MD5E-s20098--698c01b2242ec9619021231bcaa0a42e.nii.gz

OHSU/sub-0050145/mri/aal3_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050145/mri/aal3_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/PF/MD5E-s185028--a145f521bdbd9fd3d2798c12f5cc8600.nii.gz/MD5E-s185028--a145f521bdbd9fd3d2798c12f5cc8600.nii.gz

OHSU/sub-0050145/mri/anatomy3_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050145/mri/anatomy3_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mx/M2/MD5E-s133891--9064363b1e8a011dcc97166bc2310b24.nii.gz/MD5E-s133891--9064363b1e8a011dcc97166bc2310b24.nii.gz

OHSU/sub-0050145/mri/anon_misub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pf/93/MD5E-s3858458--a3e64712527966a1a35b0c0e48e10e9e.nii.gz/MD5E-s3858458--a3e64712527966a1a35b0c0e48e10e9e.nii.gz

OHSU/sub-0050145/mri/anon_msub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W8/V3/MD5E-s8573323--a9dfe5ab003f59376ddc441cf24e8e4b.nii.gz/MD5E-s8573323--a9dfe5ab003f59376ddc441cf24e8e4b.nii.gz

OHSU/sub-0050145/mri/cat_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pf/GV/MD5E-s92898--c6652539964c97539001c4ffbb27a9e1.nii.gz/MD5E-s92898--c6652539964c97539001c4ffbb27a9e1.nii.gz

OHSU/sub-0050145/mri/cobra_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050145/mri/cobra_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/zk/MD5E-s41756--f50328ce55a4c528024d66fb6e04a8d7.nii.gz/MD5E-s41756--f50328ce55a4c528024d66fb6e04a8d7.nii.gz

OHSU/sub-0050145/mri/hammers_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050145/mri/hammers_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4j/9W/MD5E-s144081--ce4667174c6e173310ef784f399b4ffd.nii.gz/MD5E-s144081--ce4667174c6e173310ef784f399b4ffd.nii.gz

OHSU/sub-0050145/mri/ibsr_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050145/mri/ibsr_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Q/vP/MD5E-s150706--5ddaabe51cdfc45a2951f2695c04c887.nii.gz/MD5E-s150706--5ddaabe51cdfc45a2951f2695c04c887.nii.gz

OHSU/sub-0050145/mri/it_sub-0050145_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/06/83/MD5E-s283--8104133a20c40ff0e6c5a322160255fa.mat/MD5E-s283--8104133a20c40ff0e6c5a322160255fa.mat

OHSU/sub-0050145/mri/it_sub-0050145_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/Xz/MD5E-s283--50f64820c00c337595c4349f9f897a6d.mat/MD5E-s283--50f64820c00c337595c4349f9f897a6d.mat

OHSU/sub-0050145/mri/iy_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JQ/F5/MD5E-s42536791--8565dff0203f35c3f544292fc18a9553.nii.gz/MD5E-s42536791--8565dff0203f35c3f544292fc18a9553.nii.gz

OHSU/sub-0050145/mri/julichbrain_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050145/mri/julichbrain_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050145/mri/lpba40_sub-0050145_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050145/mri/lpba40_sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050145/mri/m0wp1sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/m0wp2sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/m0wp3sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/mori_sub-0050145_T1w.csv

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OHSU/sub-0050145/mri/mori_sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/mwp1sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050145/mri/mwp2sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050145/mri/mwp3sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/X6/MD5E-s2416992--2226c278ecef9e27f5bd3653c10672f9.nii.gz/MD5E-s2416992--2226c278ecef9e27f5bd3653c10672f9.nii.gz

OHSU/sub-0050145/mri/neuromorphometrics_sub-0050145_T1w.csv

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OHSU/sub-0050145/mri/neuromorphometrics_sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/p0sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/p1sub-0050145_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050145/mri/p2sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/p3sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/rp1sub-0050145_T1w_affine.nii.gz

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OHSU/sub-0050145/mri/rp2sub-0050145_T1w_affine.nii.gz

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OHSU/sub-0050145/mri/rp3sub-0050145_T1w_affine.nii.gz

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OHSU/sub-0050145/mri/t_sub-0050145_T1w_affine_reorient.mat

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OHSU/sub-0050145/mri/t_sub-0050145_T1w_rigid_reorient.mat

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OHSU/sub-0050145/mri/thalamus_sub-0050145_T1w.csv

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OHSU/sub-0050145/mri/thalamus_sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wj_sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wmisub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wmsub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wp0sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wp1sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wp2sub-0050145_T1w.nii.gz

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OHSU/sub-0050145/mri/wp3sub-0050145_T1w.nii.gz

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