[DATALAD RUNCMD] Compute Pitt/sub-0050008

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050008/anat/sub-0050008_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050008"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050008/label/catROI_sub-0050008_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wP/07/MD5E-s61270--0f65df2b74fe7c402253ca2b50fa7e4b.mat/MD5E-s61270--0f65df2b74fe7c402253ca2b50fa7e4b.mat

Pitt/sub-0050008/label/catROI_sub-0050008_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/7g/MD5E-s188733--3e2bf2d8506600190018c3c192181738.xml/MD5E-s188733--3e2bf2d8506600190018c3c192181738.xml

Pitt/sub-0050008/label/catROIs_sub-0050008_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wg/Vx/MD5E-s120027--22a2e73bd16b735ae83910a60e4fe792.mat/MD5E-s120027--22a2e73bd16b735ae83910a60e4fe792.mat

Pitt/sub-0050008/label/catROIs_sub-0050008_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VQ/65/MD5E-s332126--5908c33aba4c89ac19aceedf4561c83b.xml/MD5E-s332126--5908c33aba4c89ac19aceedf4561c83b.xml

Pitt/sub-0050008/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050008_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050008/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qZ/34/MD5E-s157553--69b9e3105e51b23acf222c0116f56edc.nii.gz/MD5E-s157553--69b9e3105e51b23acf222c0116f56edc.nii.gz

Pitt/sub-0050008/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050008_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050008/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/19/83/MD5E-s178089--cde3cb5874906d0a39480b01f8e96d16.nii.gz/MD5E-s178089--cde3cb5874906d0a39480b01f8e96d16.nii.gz

Pitt/sub-0050008/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050008_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050008/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050008_T1w.nii.gz

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+../../../.git/annex/objects/4w/Wz/MD5E-s239516--4393590b4ebdb719c956056d9ffa58dc.nii.gz/MD5E-s239516--4393590b4ebdb719c956056d9ffa58dc.nii.gz

Pitt/sub-0050008/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050008_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050008/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P1/m3/MD5E-s267374--6234eaf5a71b42dfe67097b3b4fe6cda.nii.gz/MD5E-s267374--6234eaf5a71b42dfe67097b3b4fe6cda.nii.gz

Pitt/sub-0050008/mri/Tian_Subcortex_S2_7T_sub-0050008_T1w.csv

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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050008/mri/Tian_Subcortex_S2_7T_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/aal3_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/aal3_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/anatomy3_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/anatomy3_sub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050008/mri/anon_misub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/anon_msub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vj/5k/MD5E-s13113171--1af76366c190a8367c097c1f8b85a4ce.nii.gz/MD5E-s13113171--1af76366c190a8367c097c1f8b85a4ce.nii.gz

Pitt/sub-0050008/mri/cat_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/cobra_sub-0050008_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050008/mri/cobra_sub-0050008_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W0/0w/MD5E-s46109--bb5e19403700864e0f5473b4b974557d.nii.gz/MD5E-s46109--bb5e19403700864e0f5473b4b974557d.nii.gz

Pitt/sub-0050008/mri/hammers_sub-0050008_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050008/mri/hammers_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/ibsr_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/ibsr_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/it_sub-0050008_T1w_affine_reorient.mat

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Pitt/sub-0050008/mri/it_sub-0050008_T1w_rigid_reorient.mat

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Pitt/sub-0050008/mri/iy_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/julichbrain_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/julichbrain_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/lpba40_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/lpba40_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/m0wp1sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/m0wp2sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/m0wp3sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/mori_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/mori_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/mwp1sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/mwp2sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/mwp3sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/neuromorphometrics_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/neuromorphometrics_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/p0sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/p1sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/p2sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/p3sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/rp1sub-0050008_T1w_affine.nii.gz

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Pitt/sub-0050008/mri/rp2sub-0050008_T1w_affine.nii.gz

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Pitt/sub-0050008/mri/rp3sub-0050008_T1w_affine.nii.gz

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Pitt/sub-0050008/mri/t_sub-0050008_T1w_affine_reorient.mat

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Pitt/sub-0050008/mri/t_sub-0050008_T1w_rigid_reorient.mat

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Pitt/sub-0050008/mri/thalamus_sub-0050008_T1w.csv

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Pitt/sub-0050008/mri/thalamus_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wj_sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wmisub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wp0sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wp1sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wp2sub-0050008_T1w.nii.gz

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Pitt/sub-0050008/mri/wp3sub-0050008_T1w.nii.gz

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