[DATALAD RUNCMD] Compute UM_1/sub-0050280

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050280/anat/sub-0050280_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050280"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050280/label/catROI_sub-0050280_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5Q/zj/MD5E-s61351--e1e8ab93ca45bf068358126317e4d836.mat/MD5E-s61351--e1e8ab93ca45bf068358126317e4d836.mat

UM_1/sub-0050280/label/catROI_sub-0050280_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VV/Xf/MD5E-s188836--86b81df136e85c30ddd5f6e250c50723.xml/MD5E-s188836--86b81df136e85c30ddd5f6e250c50723.xml

UM_1/sub-0050280/label/catROIs_sub-0050280_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1f/q0/MD5E-s120047--3c113ab8844e98cb60dfc43501da2bd3.mat/MD5E-s120047--3c113ab8844e98cb60dfc43501da2bd3.mat

UM_1/sub-0050280/label/catROIs_sub-0050280_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pg/XF/MD5E-s332125--e77d3d498dd5031c74be437a13fd9373.xml/MD5E-s332125--e77d3d498dd5031c74be437a13fd9373.xml

UM_1/sub-0050280/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050280/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/mv/MD5E-s157947--f8c55c2c82d4aec1643cf2bada735350.nii.gz/MD5E-s157947--f8c55c2c82d4aec1643cf2bada735350.nii.gz

UM_1/sub-0050280/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050280/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/0q/MD5E-s178750--4ab7788d39d5a1028b9db7f93ff159e3.nii.gz/MD5E-s178750--4ab7788d39d5a1028b9db7f93ff159e3.nii.gz

UM_1/sub-0050280/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050280/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w7/kX/MD5E-s225382--928b94e301a4eeb77b16fad48dc222f4.nii.gz/MD5E-s225382--928b94e301a4eeb77b16fad48dc222f4.nii.gz

UM_1/sub-0050280/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050280/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/ZP/MD5E-s250413--c77d7555664562e6001c1ba870cc9ae6.nii.gz/MD5E-s250413--c77d7555664562e6001c1ba870cc9ae6.nii.gz

UM_1/sub-0050280/mri/Tian_Subcortex_S2_7T_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050280/mri/Tian_Subcortex_S2_7T_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/aal3_sub-0050280_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/aal3_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/anatomy3_sub-0050280_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/anatomy3_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/anon_misub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/anon_msub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6X/MJ/MD5E-s5408453--e85ddb6a49dc4e323e860a0c57c1e5aa.nii.gz/MD5E-s5408453--e85ddb6a49dc4e323e860a0c57c1e5aa.nii.gz

UM_1/sub-0050280/mri/cat_sub-0050280_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/cobra_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050280/mri/cobra_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/hammers_sub-0050280_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050280/mri/hammers_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/ibsr_sub-0050280_T1w.csv

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UM_1/sub-0050280/mri/ibsr_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/it_sub-0050280_T1w_affine_reorient.mat

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UM_1/sub-0050280/mri/it_sub-0050280_T1w_rigid_reorient.mat

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UM_1/sub-0050280/mri/iy_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/julichbrain_sub-0050280_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050280/mri/julichbrain_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/lpba40_sub-0050280_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050280/mri/lpba40_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/m0wp1sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/m0wp2sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/m0wp3sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/mori_sub-0050280_T1w.csv

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UM_1/sub-0050280/mri/mori_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/mwp1sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/mwp2sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/mwp3sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/neuromorphometrics_sub-0050280_T1w.csv

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UM_1/sub-0050280/mri/neuromorphometrics_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/p0sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/p1sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/p2sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/p3sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/rp1sub-0050280_T1w_affine.nii.gz

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UM_1/sub-0050280/mri/rp2sub-0050280_T1w_affine.nii.gz

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UM_1/sub-0050280/mri/rp3sub-0050280_T1w_affine.nii.gz

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UM_1/sub-0050280/mri/t_sub-0050280_T1w_affine_reorient.mat

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UM_1/sub-0050280/mri/t_sub-0050280_T1w_rigid_reorient.mat

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UM_1/sub-0050280/mri/thalamus_sub-0050280_T1w.csv

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UM_1/sub-0050280/mri/thalamus_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wj_sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wmisub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wp0sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wp1sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wp2sub-0050280_T1w.nii.gz

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UM_1/sub-0050280/mri/wp3sub-0050280_T1w.nii.gz

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