[DATALAD RUNCMD] Compute Trinity/sub-0050264

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050264/anat/sub-0050264_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050264"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050264/label/catROI_sub-0050264_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/3F/MD5E-s61290--7e4e58df3f996dc8b5f24e206cf5dfe2.mat/MD5E-s61290--7e4e58df3f996dc8b5f24e206cf5dfe2.mat

Trinity/sub-0050264/label/catROI_sub-0050264_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K3/02/MD5E-s188496--42aba15b6f658c92a361622098faab0b.xml/MD5E-s188496--42aba15b6f658c92a361622098faab0b.xml

Trinity/sub-0050264/label/catROIs_sub-0050264_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/WX/MD5E-s120043--fd92940c7379761dcd99f38845595b7f.mat/MD5E-s120043--fd92940c7379761dcd99f38845595b7f.mat

Trinity/sub-0050264/label/catROIs_sub-0050264_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vV/g6/MD5E-s332036--e1e0260309b072610c4ceeed3b9519fb.xml/MD5E-s332036--e1e0260309b072610c4ceeed3b9519fb.xml

Trinity/sub-0050264/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050264/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/wk/MD5E-s182613--b3883b33106bc601af4845891304aabf.nii.gz/MD5E-s182613--b3883b33106bc601af4845891304aabf.nii.gz

Trinity/sub-0050264/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050264/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/FJ/MD5E-s206144--e9cb835adb2628535e2334165bb9f530.nii.gz/MD5E-s206144--e9cb835adb2628535e2334165bb9f530.nii.gz

Trinity/sub-0050264/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050264/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7W/z0/MD5E-s277432--f6f65915f7e23324dccee080b7fc0c6a.nii.gz/MD5E-s277432--f6f65915f7e23324dccee080b7fc0c6a.nii.gz

Trinity/sub-0050264/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050264/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3v/fm/MD5E-s310274--556113b4867007a4db5b731289b79ba4.nii.gz/MD5E-s310274--556113b4867007a4db5b731289b79ba4.nii.gz

Trinity/sub-0050264/mri/Tian_Subcortex_S2_7T_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050264/mri/Tian_Subcortex_S2_7T_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0k/XJ/MD5E-s23864--d0de0df63091331d2cefd0d7c56236da.nii.gz/MD5E-s23864--d0de0df63091331d2cefd0d7c56236da.nii.gz

Trinity/sub-0050264/mri/aal3_sub-0050264_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050264/mri/aal3_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050264/mri/anatomy3_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/anatomy3_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050264/mri/anon_misub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050264/mri/anon_msub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4M/pZ/MD5E-s9585789--c62afd42522cc385d783b131a9bff518.nii.gz/MD5E-s9585789--c62afd42522cc385d783b131a9bff518.nii.gz

Trinity/sub-0050264/mri/cat_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/10/MD5E-s109649--5b51590ba033452dadb3a98f0fb9de8f.nii.gz/MD5E-s109649--5b51590ba033452dadb3a98f0fb9de8f.nii.gz

Trinity/sub-0050264/mri/cobra_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050264/mri/cobra_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2M/0X/MD5E-s49379--46856d17f6b6244171f9e1529b4d6ea5.nii.gz/MD5E-s49379--46856d17f6b6244171f9e1529b4d6ea5.nii.gz

Trinity/sub-0050264/mri/hammers_sub-0050264_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050264/mri/hammers_sub-0050264_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PF/vP/MD5E-s161540--487edf1332940796380e2ab36d0c8b2c.nii.gz/MD5E-s161540--487edf1332940796380e2ab36d0c8b2c.nii.gz

Trinity/sub-0050264/mri/ibsr_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/ibsr_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/it_sub-0050264_T1w_affine_reorient.mat

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Trinity/sub-0050264/mri/it_sub-0050264_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/7w/MD5E-s283--0ccf52f5675f27ad3ced1724a04957e5.mat/MD5E-s283--0ccf52f5675f27ad3ced1724a04957e5.mat

Trinity/sub-0050264/mri/iy_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/julichbrain_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/julichbrain_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/lpba40_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/lpba40_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/m0wp1sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/m0wp2sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/m0wp3sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/mori_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/mori_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/mwp1sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/mwp2sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/mwp3sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/neuromorphometrics_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/neuromorphometrics_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/p0sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/p1sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/p2sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/p3sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/rp1sub-0050264_T1w_affine.nii.gz

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Trinity/sub-0050264/mri/rp2sub-0050264_T1w_affine.nii.gz

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Trinity/sub-0050264/mri/rp3sub-0050264_T1w_affine.nii.gz

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Trinity/sub-0050264/mri/t_sub-0050264_T1w_affine_reorient.mat

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Trinity/sub-0050264/mri/t_sub-0050264_T1w_rigid_reorient.mat

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Trinity/sub-0050264/mri/thalamus_sub-0050264_T1w.csv

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Trinity/sub-0050264/mri/thalamus_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wj_sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wmisub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wmsub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wp0sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wp1sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wp2sub-0050264_T1w.nii.gz

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Trinity/sub-0050264/mri/wp3sub-0050264_T1w.nii.gz

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