[DATALAD RUNCMD] Compute UM_1/sub-0050304

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050304/anat/sub-0050304_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050304"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050304/label/catROI_sub-0050304_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wM/Px/MD5E-s61441--c7074da4331914ab4fe6a6279a54c4c8.mat/MD5E-s61441--c7074da4331914ab4fe6a6279a54c4c8.mat

UM_1/sub-0050304/label/catROI_sub-0050304_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/V1/w7/MD5E-s188858--aeb6c7b60253f899fc49e954ead58601.xml/MD5E-s188858--aeb6c7b60253f899fc49e954ead58601.xml

UM_1/sub-0050304/label/catROIs_sub-0050304_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pg/q4/MD5E-s120224--d09d4cd29193e56cb6802a7c1df04f28.mat/MD5E-s120224--d09d4cd29193e56cb6802a7c1df04f28.mat

UM_1/sub-0050304/label/catROIs_sub-0050304_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/g5/G3/MD5E-s332150--928d190505606f7dd135c1dacfceaa8a.xml/MD5E-s332150--928d190505606f7dd135c1dacfceaa8a.xml

UM_1/sub-0050304/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050304/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6X/W0/MD5E-s163542--11df37f2fbe1763886ae1d0a206eb49f.nii.gz/MD5E-s163542--11df37f2fbe1763886ae1d0a206eb49f.nii.gz

UM_1/sub-0050304/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050304/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1g/5Z/MD5E-s183854--948f913e32cf4b4173bb8d9eef8d7f42.nii.gz/MD5E-s183854--948f913e32cf4b4173bb8d9eef8d7f42.nii.gz

UM_1/sub-0050304/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050304/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/66/MD5E-s230166--742ba140161e9fff8aaf5ce82dffee09.nii.gz/MD5E-s230166--742ba140161e9fff8aaf5ce82dffee09.nii.gz

UM_1/sub-0050304/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050304/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5p/x1/MD5E-s256524--33e9464a3cee04c76989951ede50076f.nii.gz/MD5E-s256524--33e9464a3cee04c76989951ede50076f.nii.gz

UM_1/sub-0050304/mri/Tian_Subcortex_S2_7T_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050304/mri/Tian_Subcortex_S2_7T_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xV/mv/MD5E-s20114--2df77fd7f091b0bb26fbe55569a0975b.nii.gz/MD5E-s20114--2df77fd7f091b0bb26fbe55569a0975b.nii.gz

UM_1/sub-0050304/mri/aal3_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050304/mri/aal3_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/v4/MD5E-s181961--1c7acb091ba1598031c5c8a248139159.nii.gz/MD5E-s181961--1c7acb091ba1598031c5c8a248139159.nii.gz

UM_1/sub-0050304/mri/anatomy3_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050304/mri/anatomy3_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WF/5j/MD5E-s129010--202abbc1d8fcdadb5c60784c28771498.nii.gz/MD5E-s129010--202abbc1d8fcdadb5c60784c28771498.nii.gz

UM_1/sub-0050304/mri/anon_misub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8v/qP/MD5E-s7069721--847265cbfc2b91c7978c6e8142c40d73.nii.gz/MD5E-s7069721--847265cbfc2b91c7978c6e8142c40d73.nii.gz

UM_1/sub-0050304/mri/anon_msub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gj/Gk/MD5E-s7033683--89fc4e4aec35b2d2a50f3166952fd537.nii.gz/MD5E-s7033683--89fc4e4aec35b2d2a50f3166952fd537.nii.gz

UM_1/sub-0050304/mri/cat_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6W/mw/MD5E-s95062--6cc5de228b41271c38d18c1b33827f52.nii.gz/MD5E-s95062--6cc5de228b41271c38d18c1b33827f52.nii.gz

UM_1/sub-0050304/mri/cobra_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050304/mri/cobra_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7W/15/MD5E-s44100--ec85ece011b9280dc2b8a8a267d95aac.nii.gz/MD5E-s44100--ec85ece011b9280dc2b8a8a267d95aac.nii.gz

UM_1/sub-0050304/mri/hammers_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050304/mri/hammers_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8v/zw/MD5E-s141575--a6715810dfdd011affd3f66d7ca816c4.nii.gz/MD5E-s141575--a6715810dfdd011affd3f66d7ca816c4.nii.gz

UM_1/sub-0050304/mri/ibsr_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_1/sub-0050304/mri/ibsr_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7w/5W/MD5E-s148149--ccae520e705f48cdd2611781d5bca787.nii.gz/MD5E-s148149--ccae520e705f48cdd2611781d5bca787.nii.gz

UM_1/sub-0050304/mri/it_sub-0050304_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/gz/MD5E-s282--f26254084b624d555f11ddfe71067f65.mat/MD5E-s282--f26254084b624d555f11ddfe71067f65.mat

UM_1/sub-0050304/mri/it_sub-0050304_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VP/W6/MD5E-s282--d2724bb19853a0852bffae25805b8d32.mat/MD5E-s282--d2724bb19853a0852bffae25805b8d32.mat

UM_1/sub-0050304/mri/iy_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zV/6M/MD5E-s39895472--9279920c42242470f6ed6d544b1bbb95.nii.gz/MD5E-s39895472--9279920c42242470f6ed6d544b1bbb95.nii.gz

UM_1/sub-0050304/mri/julichbrain_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050304/mri/julichbrain_sub-0050304_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050304/mri/lpba40_sub-0050304_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050304/mri/lpba40_sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/m0wp1sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/m0wp2sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/m0wp3sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/mori_sub-0050304_T1w.csv

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UM_1/sub-0050304/mri/mori_sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/mwp1sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/mwp2sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/mwp3sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/neuromorphometrics_sub-0050304_T1w.csv

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UM_1/sub-0050304/mri/neuromorphometrics_sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/p0sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/p1sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/p2sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/p3sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/rp1sub-0050304_T1w_affine.nii.gz

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UM_1/sub-0050304/mri/rp2sub-0050304_T1w_affine.nii.gz

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UM_1/sub-0050304/mri/rp3sub-0050304_T1w_affine.nii.gz

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UM_1/sub-0050304/mri/t_sub-0050304_T1w_affine_reorient.mat

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UM_1/sub-0050304/mri/t_sub-0050304_T1w_rigid_reorient.mat

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UM_1/sub-0050304/mri/thalamus_sub-0050304_T1w.csv

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UM_1/sub-0050304/mri/thalamus_sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wj_sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wmisub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wmsub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wp0sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wp1sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wp2sub-0050304_T1w.nii.gz

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UM_1/sub-0050304/mri/wp3sub-0050304_T1w.nii.gz

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