[DATALAD RUNCMD] Compute OHSU/sub-0050160

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050160/anat/sub-0050160_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050160"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050160/label/catROI_sub-0050160_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mx/M6/MD5E-s61240--a699cfa1c93961a7cbf8cf2208dc4f25.mat/MD5E-s61240--a699cfa1c93961a7cbf8cf2208dc4f25.mat

OHSU/sub-0050160/label/catROI_sub-0050160_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/M1/MD5E-s188549--ecfd574a8de2751bf766440b6786d677.xml/MD5E-s188549--ecfd574a8de2751bf766440b6786d677.xml

OHSU/sub-0050160/label/catROIs_sub-0050160_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/PF/MD5E-s120030--3a40c8bd590501d143231f9dc0578b3a.mat/MD5E-s120030--3a40c8bd590501d143231f9dc0578b3a.mat

OHSU/sub-0050160/label/catROIs_sub-0050160_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mP/zK/MD5E-s332070--9fc79d34dfefcef4bea39badfb84704e.xml/MD5E-s332070--9fc79d34dfefcef4bea39badfb84704e.xml

OHSU/sub-0050160/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050160/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/f7/MD5E-s162796--dc1a57a1a9fd884fea0c0e32e102c388.nii.gz/MD5E-s162796--dc1a57a1a9fd884fea0c0e32e102c388.nii.gz

OHSU/sub-0050160/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050160/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/q5/MD5E-s182747--0f40ffd753700fa3915bc5c615743d84.nii.gz/MD5E-s182747--0f40ffd753700fa3915bc5c615743d84.nii.gz

OHSU/sub-0050160/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050160/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7m/3j/MD5E-s242263--6dc1b957dc5f111a03515ed222f6d33e.nii.gz/MD5E-s242263--6dc1b957dc5f111a03515ed222f6d33e.nii.gz

OHSU/sub-0050160/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050160/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G1/g6/MD5E-s271522--ea2898b4855a208e964330792b253862.nii.gz/MD5E-s271522--ea2898b4855a208e964330792b253862.nii.gz

OHSU/sub-0050160/mri/Tian_Subcortex_S2_7T_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050160/mri/Tian_Subcortex_S2_7T_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/71/kj/MD5E-s21051--1ed48e677b8f47a4412b77efbdaaf819.nii.gz/MD5E-s21051--1ed48e677b8f47a4412b77efbdaaf819.nii.gz

OHSU/sub-0050160/mri/aal3_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050160/mri/aal3_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/zf/MD5E-s184289--ceaa0a8d70c5a8616754a864af0fd6e1.nii.gz/MD5E-s184289--ceaa0a8d70c5a8616754a864af0fd6e1.nii.gz

OHSU/sub-0050160/mri/anatomy3_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050160/mri/anatomy3_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5w/w1/MD5E-s132066--5d648318eccb4b5977227948fe08b280.nii.gz/MD5E-s132066--5d648318eccb4b5977227948fe08b280.nii.gz

OHSU/sub-0050160/mri/anon_misub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/wk/MD5E-s7197273--af018d83941816568f54b0a3d20ce558.nii.gz/MD5E-s7197273--af018d83941816568f54b0a3d20ce558.nii.gz

OHSU/sub-0050160/mri/anon_msub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JV/K2/MD5E-s8633210--8b82df87ffda8f463860a996d30ecab5.nii.gz/MD5E-s8633210--8b82df87ffda8f463860a996d30ecab5.nii.gz

OHSU/sub-0050160/mri/cat_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/w5/MD5E-s95135--ac5eb8d8b73ae249c9efa0cd60c0a90a.nii.gz/MD5E-s95135--ac5eb8d8b73ae249c9efa0cd60c0a90a.nii.gz

OHSU/sub-0050160/mri/cobra_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050160/mri/cobra_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vf/9F/MD5E-s45301--fe3dc561694fb749191c030b4a561db2.nii.gz/MD5E-s45301--fe3dc561694fb749191c030b4a561db2.nii.gz

OHSU/sub-0050160/mri/hammers_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050160/mri/hammers_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3g/7q/MD5E-s143904--6b34ac9f0569d70722e28753e4e06621.nii.gz/MD5E-s143904--6b34ac9f0569d70722e28753e4e06621.nii.gz

OHSU/sub-0050160/mri/ibsr_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050160/mri/ibsr_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/pF/MD5E-s153027--e691f9a9abb30a2277f3e73d9f023c62.nii.gz/MD5E-s153027--e691f9a9abb30a2277f3e73d9f023c62.nii.gz

OHSU/sub-0050160/mri/it_sub-0050160_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xz/0V/MD5E-s283--5eb0c32e1f39367639a7ac4e96526587.mat/MD5E-s283--5eb0c32e1f39367639a7ac4e96526587.mat

OHSU/sub-0050160/mri/it_sub-0050160_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/83/MD5E-s282--00fae37d06c536c5bca9463a36ca68ec.mat/MD5E-s282--00fae37d06c536c5bca9463a36ca68ec.mat

OHSU/sub-0050160/mri/iy_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vv/Qg/MD5E-s43245746--94699fdb993e60be6bd4accb82e77c69.nii.gz/MD5E-s43245746--94699fdb993e60be6bd4accb82e77c69.nii.gz

OHSU/sub-0050160/mri/julichbrain_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050160/mri/julichbrain_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/JZ/MD5E-s196488--69d96ea3f52467aa736520340f22486e.nii.gz/MD5E-s196488--69d96ea3f52467aa736520340f22486e.nii.gz

OHSU/sub-0050160/mri/lpba40_sub-0050160_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050160/mri/lpba40_sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050160/mri/m0wp1sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/G8/MD5E-s2581902--0e5ac50d82725f44a8559bc5b1b64ad9.nii.gz/MD5E-s2581902--0e5ac50d82725f44a8559bc5b1b64ad9.nii.gz

OHSU/sub-0050160/mri/m0wp2sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/m0wp3sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zw/xg/MD5E-s2406703--f42821533e5b5e1350984f38bb9169b6.nii.gz/MD5E-s2406703--f42821533e5b5e1350984f38bb9169b6.nii.gz

OHSU/sub-0050160/mri/mori_sub-0050160_T1w.csv

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OHSU/sub-0050160/mri/mori_sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/mwp1sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/mwp2sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/mwp3sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/neuromorphometrics_sub-0050160_T1w.csv

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OHSU/sub-0050160/mri/neuromorphometrics_sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/p0sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/p1sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/p2sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/p3sub-0050160_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050160/mri/rp1sub-0050160_T1w_affine.nii.gz

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OHSU/sub-0050160/mri/rp2sub-0050160_T1w_affine.nii.gz

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OHSU/sub-0050160/mri/rp3sub-0050160_T1w_affine.nii.gz

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OHSU/sub-0050160/mri/t_sub-0050160_T1w_affine_reorient.mat

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OHSU/sub-0050160/mri/t_sub-0050160_T1w_rigid_reorient.mat

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OHSU/sub-0050160/mri/thalamus_sub-0050160_T1w.csv

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OHSU/sub-0050160/mri/thalamus_sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wj_sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wmisub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wmsub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wp0sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wp1sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wp2sub-0050160_T1w.nii.gz

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OHSU/sub-0050160/mri/wp3sub-0050160_T1w.nii.gz

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