[DATALAD RUNCMD] Compute KKI/sub-0050787

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050787/anat/sub-0050787_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050787"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050787/label/catROI_sub-0050787_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ff/71/MD5E-s61376--1a5526990cd6e18069f0e6b218c1a6d4.mat/MD5E-s61376--1a5526990cd6e18069f0e6b218c1a6d4.mat

KKI/sub-0050787/label/catROI_sub-0050787_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/Zj/MD5E-s188887--c65d07d08d80c100072015671552f004.xml/MD5E-s188887--c65d07d08d80c100072015671552f004.xml

KKI/sub-0050787/label/catROIs_sub-0050787_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MK/3M/MD5E-s120032--27982e94ff4e442d0341c2abf6a1107d.mat/MD5E-s120032--27982e94ff4e442d0341c2abf6a1107d.mat

KKI/sub-0050787/label/catROIs_sub-0050787_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/79/Z1/MD5E-s332081--f31b35175d0a72a28a72231012f76ed6.xml/MD5E-s332081--f31b35175d0a72a28a72231012f76ed6.xml

KKI/sub-0050787/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050787/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fp/Z1/MD5E-s191628--39b4d64c8208536b46323613862dac8b.nii.gz/MD5E-s191628--39b4d64c8208536b46323613862dac8b.nii.gz

KKI/sub-0050787/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050787/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1v/5k/MD5E-s214146--3869e04f35ce1fdcb5b55701bf2b711d.nii.gz/MD5E-s214146--3869e04f35ce1fdcb5b55701bf2b711d.nii.gz

KKI/sub-0050787/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050787/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/0J/MD5E-s272767--995a4f3ae1b032188d91c12793e989c0.nii.gz/MD5E-s272767--995a4f3ae1b032188d91c12793e989c0.nii.gz

KKI/sub-0050787/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050787/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fm/w2/MD5E-s303794--c4fbafe910f82de47a8720f82fc3152d.nii.gz/MD5E-s303794--c4fbafe910f82de47a8720f82fc3152d.nii.gz

KKI/sub-0050787/mri/Tian_Subcortex_S2_7T_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050787/mri/Tian_Subcortex_S2_7T_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3p/j4/MD5E-s28641--78b5b1d8fea44fd7afef7da45f172f27.nii.gz/MD5E-s28641--78b5b1d8fea44fd7afef7da45f172f27.nii.gz

KKI/sub-0050787/mri/aal3_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050787/mri/aal3_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KF/xf/MD5E-s216658--ceec5536f54ab5553cdb33c796882e28.nii.gz/MD5E-s216658--ceec5536f54ab5553cdb33c796882e28.nii.gz

KKI/sub-0050787/mri/anatomy3_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050787/mri/anatomy3_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/gg/MD5E-s154378--4a7dababbdf7557414d4773fcf662735.nii.gz/MD5E-s154378--4a7dababbdf7557414d4773fcf662735.nii.gz

KKI/sub-0050787/mri/anon_misub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VW/Ww/MD5E-s4926926--306910d4f82550731422d49c0d823237.nii.gz/MD5E-s4926926--306910d4f82550731422d49c0d823237.nii.gz

KKI/sub-0050787/mri/anon_msub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gw/6M/MD5E-s12471230--e93191bcb923e1a4e40b66f59d280940.nii.gz/MD5E-s12471230--e93191bcb923e1a4e40b66f59d280940.nii.gz

KKI/sub-0050787/mri/cat_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/jK/MD5E-s115772--f89224a31abbdf89584c4085a2597e9d.nii.gz/MD5E-s115772--f89224a31abbdf89584c4085a2597e9d.nii.gz

KKI/sub-0050787/mri/cobra_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050787/mri/cobra_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z3/k3/MD5E-s54605--f29ca7228ad30ec61efbe828ef2a90cb.nii.gz/MD5E-s54605--f29ca7228ad30ec61efbe828ef2a90cb.nii.gz

KKI/sub-0050787/mri/hammers_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050787/mri/hammers_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fz/FV/MD5E-s169376--4bc682c35620fa99b9fbc6ab6a39ee99.nii.gz/MD5E-s169376--4bc682c35620fa99b9fbc6ab6a39ee99.nii.gz

KKI/sub-0050787/mri/ibsr_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050787/mri/ibsr_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Z/WP/MD5E-s174974--f8b28529f24d6953d6501d9d54065984.nii.gz/MD5E-s174974--f8b28529f24d6953d6501d9d54065984.nii.gz

KKI/sub-0050787/mri/it_sub-0050787_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9w/gK/MD5E-s283--fa79834df851734e4a3a4afe6b14f8aa.mat/MD5E-s283--fa79834df851734e4a3a4afe6b14f8aa.mat

KKI/sub-0050787/mri/it_sub-0050787_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kp/5M/MD5E-s284--d3ce2e791488c6964463595244ecc753.mat/MD5E-s284--d3ce2e791488c6964463595244ecc753.mat

KKI/sub-0050787/mri/iy_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m3/39/MD5E-s47726772--85ee19767d8c200db5384344e44c6c6a.nii.gz/MD5E-s47726772--85ee19767d8c200db5384344e44c6c6a.nii.gz

KKI/sub-0050787/mri/julichbrain_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050787/mri/julichbrain_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vg/Kw/MD5E-s228542--72c6631e3f66bac42cd943728888db7a.nii.gz/MD5E-s228542--72c6631e3f66bac42cd943728888db7a.nii.gz

KKI/sub-0050787/mri/lpba40_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050787/mri/lpba40_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/m0wp1sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/Xw/MD5E-s2630521--6285cd04fcda239c1192a22b24892517.nii.gz/MD5E-s2630521--6285cd04fcda239c1192a22b24892517.nii.gz

KKI/sub-0050787/mri/m0wp2sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f5/wk/MD5E-s2369804--2104788f193a73353290905bf32e5844.nii.gz/MD5E-s2369804--2104788f193a73353290905bf32e5844.nii.gz

KKI/sub-0050787/mri/m0wp3sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f4/KM/MD5E-s2808235--1f4b11d67914f014d1e3c5fd9d82df4e.nii.gz/MD5E-s2808235--1f4b11d67914f014d1e3c5fd9d82df4e.nii.gz

KKI/sub-0050787/mri/mori_sub-0050787_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/mori_sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/mwp1sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ww/4V/MD5E-s2634678--a3dab2d6cab759000c1f7422c3574126.nii.gz/MD5E-s2634678--a3dab2d6cab759000c1f7422c3574126.nii.gz

KKI/sub-0050787/mri/mwp2sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/mwp3sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/neuromorphometrics_sub-0050787_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050787/mri/neuromorphometrics_sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/p0sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/p1sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/p2sub-0050787_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/p3sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/rp1sub-0050787_T1w_affine.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/rp2sub-0050787_T1w_affine.nii.gz

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+../../../.git/annex/objects/vk/Mp/MD5E-s325424--aca0aaf3c2ad1aa06320e92ea1b3f431.nii.gz/MD5E-s325424--aca0aaf3c2ad1aa06320e92ea1b3f431.nii.gz

KKI/sub-0050787/mri/rp3sub-0050787_T1w_affine.nii.gz

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KKI/sub-0050787/mri/t_sub-0050787_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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KKI/sub-0050787/mri/t_sub-0050787_T1w_rigid_reorient.mat

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KKI/sub-0050787/mri/thalamus_sub-0050787_T1w.csv

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KKI/sub-0050787/mri/thalamus_sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wj_sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wmisub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wmsub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wp0sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wp1sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wp2sub-0050787_T1w.nii.gz

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KKI/sub-0050787/mri/wp3sub-0050787_T1w.nii.gz

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