[DATALAD RUNCMD] Compute Leuven_2/sub-0050724

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050724/anat/sub-0050724_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050724"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050724/label/catROI_sub-0050724_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/zv/MD5E-s61354--ae645f086664b07179e5013dceb21def.mat/MD5E-s61354--ae645f086664b07179e5013dceb21def.mat

Leuven_2/sub-0050724/label/catROI_sub-0050724_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zZ/97/MD5E-s188651--968070076c241ce0dca787b5d4bb4bcb.xml/MD5E-s188651--968070076c241ce0dca787b5d4bb4bcb.xml

Leuven_2/sub-0050724/label/catROIs_sub-0050724_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gW/fP/MD5E-s120083--3060010c4e19a7152d60ce396c90e89f.mat/MD5E-s120083--3060010c4e19a7152d60ce396c90e89f.mat

Leuven_2/sub-0050724/label/catROIs_sub-0050724_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JG/kp/MD5E-s332087--22b965d85588ebab77d726ff4ee864d7.xml/MD5E-s332087--22b965d85588ebab77d726ff4ee864d7.xml

Leuven_2/sub-0050724/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050724/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/18/MD5E-s182119--bbdcd60148b26a80aa7ede62fe433eb0.nii.gz/MD5E-s182119--bbdcd60148b26a80aa7ede62fe433eb0.nii.gz

Leuven_2/sub-0050724/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050724/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wM/5v/MD5E-s204125--5ba8db8d9f3d36d6abda9faf229951a6.nii.gz/MD5E-s204125--5ba8db8d9f3d36d6abda9faf229951a6.nii.gz

Leuven_2/sub-0050724/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050724/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/z9/MD5E-s258540--0055ed2a7f57ee4566f2d84a0a998e4b.nii.gz/MD5E-s258540--0055ed2a7f57ee4566f2d84a0a998e4b.nii.gz

Leuven_2/sub-0050724/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050724/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FJ/5J/MD5E-s289397--80112fccc5ecc0c32fdeed2303760dda.nii.gz/MD5E-s289397--80112fccc5ecc0c32fdeed2303760dda.nii.gz

Leuven_2/sub-0050724/mri/Tian_Subcortex_S2_7T_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050724/mri/Tian_Subcortex_S2_7T_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/7j/MD5E-s27055--b3e3b5ffcf233178a8055af2d178ef85.nii.gz/MD5E-s27055--b3e3b5ffcf233178a8055af2d178ef85.nii.gz

Leuven_2/sub-0050724/mri/aal3_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050724/mri/aal3_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/anatomy3_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050724/mri/anatomy3_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m1/QF/MD5E-s147752--c4d9e630056c81f94214a266f40b944c.nii.gz/MD5E-s147752--c4d9e630056c81f94214a266f40b944c.nii.gz

Leuven_2/sub-0050724/mri/anon_misub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/mW/MD5E-s5837367--7860e0c370c28a32bdd2f072a5551c67.nii.gz/MD5E-s5837367--7860e0c370c28a32bdd2f072a5551c67.nii.gz

Leuven_2/sub-0050724/mri/anon_msub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/v9/MD5E-s11880039--f6072477aaf850cde9c4db8266b60d08.nii.gz/MD5E-s11880039--f6072477aaf850cde9c4db8266b60d08.nii.gz

Leuven_2/sub-0050724/mri/cat_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8M/06/MD5E-s108943--4faf9c04c124e30e7ec1de98d0c1bd83.nii.gz/MD5E-s108943--4faf9c04c124e30e7ec1de98d0c1bd83.nii.gz

Leuven_2/sub-0050724/mri/cobra_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050724/mri/cobra_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J7/PM/MD5E-s53014--eddf3eb8172d04a7a9407a6ed5d2c0a9.nii.gz/MD5E-s53014--eddf3eb8172d04a7a9407a6ed5d2c0a9.nii.gz

Leuven_2/sub-0050724/mri/hammers_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050724/mri/hammers_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VK/Kq/MD5E-s160481--e536981f8492836a29a65694a7d40a9b.nii.gz/MD5E-s160481--e536981f8492836a29a65694a7d40a9b.nii.gz

Leuven_2/sub-0050724/mri/ibsr_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050724/mri/ibsr_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0j/gw/MD5E-s164888--390a97d177911d335d899905cb595364.nii.gz/MD5E-s164888--390a97d177911d335d899905cb595364.nii.gz

Leuven_2/sub-0050724/mri/it_sub-0050724_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7m/wM/MD5E-s282--fa917b78a2e6ff349ec2c749727f31c5.mat/MD5E-s282--fa917b78a2e6ff349ec2c749727f31c5.mat

Leuven_2/sub-0050724/mri/it_sub-0050724_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/z1/MD5E-s283--1afae0925a2aee174d947ed57cbb4fcb.mat/MD5E-s283--1afae0925a2aee174d947ed57cbb4fcb.mat

Leuven_2/sub-0050724/mri/iy_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kv/kF/MD5E-s43431772--478e369952bb83cfedc68d45e51c61c1.nii.gz/MD5E-s43431772--478e369952bb83cfedc68d45e51c61c1.nii.gz

Leuven_2/sub-0050724/mri/julichbrain_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050724/mri/julichbrain_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XP/94/MD5E-s217290--3551a860d19f0423ef1d0c3485d4b62d.nii.gz/MD5E-s217290--3551a860d19f0423ef1d0c3485d4b62d.nii.gz

Leuven_2/sub-0050724/mri/lpba40_sub-0050724_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_2/sub-0050724/mri/lpba40_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/m0wp1sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/m0wp2sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g7/9X/MD5E-s2283891--56529d76d84f5f321d203e6ca62a5364.nii.gz/MD5E-s2283891--56529d76d84f5f321d203e6ca62a5364.nii.gz

Leuven_2/sub-0050724/mri/m0wp3sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/mori_sub-0050724_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/mori_sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/mwp1sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7F/9p/MD5E-s2607625--dc0c313f1af3e146a8f698c9184278c3.nii.gz/MD5E-s2607625--dc0c313f1af3e146a8f698c9184278c3.nii.gz

Leuven_2/sub-0050724/mri/mwp2sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/mwp3sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gw/x7/MD5E-s2443751--6f0829d7f574c25aef81def31f6082eb.nii.gz/MD5E-s2443751--6f0829d7f574c25aef81def31f6082eb.nii.gz

Leuven_2/sub-0050724/mri/neuromorphometrics_sub-0050724_T1w.csv

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Leuven_2/sub-0050724/mri/neuromorphometrics_sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/p0sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/p1sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/p2sub-0050724_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050724/mri/p3sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/rp1sub-0050724_T1w_affine.nii.gz

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Leuven_2/sub-0050724/mri/rp2sub-0050724_T1w_affine.nii.gz

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Leuven_2/sub-0050724/mri/rp3sub-0050724_T1w_affine.nii.gz

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Leuven_2/sub-0050724/mri/t_sub-0050724_T1w_affine_reorient.mat

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Leuven_2/sub-0050724/mri/t_sub-0050724_T1w_rigid_reorient.mat

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Leuven_2/sub-0050724/mri/thalamus_sub-0050724_T1w.csv

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Leuven_2/sub-0050724/mri/thalamus_sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/wj_sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/wmisub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/wmsub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/wp0sub-0050724_T1w.nii.gz

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Leuven_2/sub-0050724/mri/wp1sub-0050724_T1w.nii.gz

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