[DATALAD RUNCMD] Compute KKI/sub-0050805

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050805/anat/sub-0050805_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050805"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050805/label/catROI_sub-0050805_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vw/Gz/MD5E-s61400--0aaa9107ca03ccd1a3e1276da9e12e92.mat/MD5E-s61400--0aaa9107ca03ccd1a3e1276da9e12e92.mat

KKI/sub-0050805/label/catROI_sub-0050805_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4f/8F/MD5E-s188751--c5942988eb6d37d648b018e311c9e4e9.xml/MD5E-s188751--c5942988eb6d37d648b018e311c9e4e9.xml

KKI/sub-0050805/label/catROIs_sub-0050805_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/QM/MD5E-s120038--1d33c4e6846ea7e24829d3cbf1721858.mat/MD5E-s120038--1d33c4e6846ea7e24829d3cbf1721858.mat

KKI/sub-0050805/label/catROIs_sub-0050805_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/30/G5/MD5E-s332206--2bae4d49507302c7357896f963045475.xml/MD5E-s332206--2bae4d49507302c7357896f963045475.xml

KKI/sub-0050805/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050805/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wJ/Fq/MD5E-s197611--4d7e3c540d1e00ca396b4373f57bfa41.nii.gz/MD5E-s197611--4d7e3c540d1e00ca396b4373f57bfa41.nii.gz

KKI/sub-0050805/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050805/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/34/zk/MD5E-s222865--b184e63994d84ef77849b8694447a80a.nii.gz/MD5E-s222865--b184e63994d84ef77849b8694447a80a.nii.gz

KKI/sub-0050805/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050805/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xg/pw/MD5E-s283718--58f2222ee5fabe9ae34a21e330752731.nii.gz/MD5E-s283718--58f2222ee5fabe9ae34a21e330752731.nii.gz

KKI/sub-0050805/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050805/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kj/vk/MD5E-s315851--14d01b9af32637352ee5fa6b03b09d70.nii.gz/MD5E-s315851--14d01b9af32637352ee5fa6b03b09d70.nii.gz

KKI/sub-0050805/mri/Tian_Subcortex_S2_7T_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050805/mri/Tian_Subcortex_S2_7T_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/3F/MD5E-s27085--629a5a2d896db68296ce8e4d1e8265a3.nii.gz/MD5E-s27085--629a5a2d896db68296ce8e4d1e8265a3.nii.gz

KKI/sub-0050805/mri/aal3_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050805/mri/aal3_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/44/p7/MD5E-s221544--e3700ba59313f760f836f262639dba33.nii.gz/MD5E-s221544--e3700ba59313f760f836f262639dba33.nii.gz

KKI/sub-0050805/mri/anatomy3_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050805/mri/anatomy3_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/gv/MD5E-s160108--91eeffb9a9d9b01676050cfe8d520eeb.nii.gz/MD5E-s160108--91eeffb9a9d9b01676050cfe8d520eeb.nii.gz

KKI/sub-0050805/mri/anon_misub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/33/W1/MD5E-s4689584--c2aaf207db9ad84c12973e631c0f8d95.nii.gz/MD5E-s4689584--c2aaf207db9ad84c12973e631c0f8d95.nii.gz

KKI/sub-0050805/mri/anon_msub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w1/16/MD5E-s12280568--8ce8a7a433495cdb2f910ee4bc53f8a2.nii.gz/MD5E-s12280568--8ce8a7a433495cdb2f910ee4bc53f8a2.nii.gz

KKI/sub-0050805/mri/cat_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mX/Q0/MD5E-s115912--d9bd939e1a0a47486faad506598f808c.nii.gz/MD5E-s115912--d9bd939e1a0a47486faad506598f808c.nii.gz

KKI/sub-0050805/mri/cobra_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050805/mri/cobra_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/z7/MD5E-s55974--7705e08b731ef6ecc07dc92025e9dacc.nii.gz/MD5E-s55974--7705e08b731ef6ecc07dc92025e9dacc.nii.gz

KKI/sub-0050805/mri/hammers_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050805/mri/hammers_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8j/55/MD5E-s173286--d0580fec3d273605e31fd80e138d8696.nii.gz/MD5E-s173286--d0580fec3d273605e31fd80e138d8696.nii.gz

KKI/sub-0050805/mri/ibsr_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050805/mri/ibsr_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M8/1P/MD5E-s179473--5d2761c33fc1549d0d68d6a770fe2332.nii.gz/MD5E-s179473--5d2761c33fc1549d0d68d6a770fe2332.nii.gz

KKI/sub-0050805/mri/it_sub-0050805_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W8/0q/MD5E-s283--10aac6dc360e8fa9a7d148afa26ffa82.mat/MD5E-s283--10aac6dc360e8fa9a7d148afa26ffa82.mat

KKI/sub-0050805/mri/it_sub-0050805_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XW/9v/MD5E-s282--38f373b8fcddc323d5660a82845e1a89.mat/MD5E-s282--38f373b8fcddc323d5660a82845e1a89.mat

KKI/sub-0050805/mri/iy_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5k/J0/MD5E-s48281522--a89b66ae627f39a519e38e9b6ab6766d.nii.gz/MD5E-s48281522--a89b66ae627f39a519e38e9b6ab6766d.nii.gz

KKI/sub-0050805/mri/julichbrain_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050805/mri/julichbrain_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1W/P9/MD5E-s237026--e27009f3c415fb919b46848634792ce7.nii.gz/MD5E-s237026--e27009f3c415fb919b46848634792ce7.nii.gz

KKI/sub-0050805/mri/lpba40_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050805/mri/lpba40_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/GP/MD5E-s171803--e3f9282969eb991c79db367af00f98aa.nii.gz/MD5E-s171803--e3f9282969eb991c79db367af00f98aa.nii.gz

KKI/sub-0050805/mri/m0wp1sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9j/06/MD5E-s2596955--1c597cd43f8131d896fc3c2abd07adb9.nii.gz/MD5E-s2596955--1c597cd43f8131d896fc3c2abd07adb9.nii.gz

KKI/sub-0050805/mri/m0wp2sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xw/Pk/MD5E-s2328676--37903fb098abcdbd3f81324b8fbc0c65.nii.gz/MD5E-s2328676--37903fb098abcdbd3f81324b8fbc0c65.nii.gz

KKI/sub-0050805/mri/m0wp3sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/zQ/MD5E-s2479914--fadcd5cebc88ad101813d8ebd5699404.nii.gz/MD5E-s2479914--fadcd5cebc88ad101813d8ebd5699404.nii.gz

KKI/sub-0050805/mri/mori_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

KKI/sub-0050805/mri/mori_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/mwp1sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/Gq/MD5E-s2600740--508318c75addc64608d2e37e24a00496.nii.gz/MD5E-s2600740--508318c75addc64608d2e37e24a00496.nii.gz

KKI/sub-0050805/mri/mwp2sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wP/8F/MD5E-s2324588--9429b88437cd175f37769e4d0ed36aec.nii.gz/MD5E-s2324588--9429b88437cd175f37769e4d0ed36aec.nii.gz

KKI/sub-0050805/mri/mwp3sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pJ/WW/MD5E-s2479574--0ba38d441f3127cd2012e4fae41eb87e.nii.gz/MD5E-s2479574--0ba38d441f3127cd2012e4fae41eb87e.nii.gz

KKI/sub-0050805/mri/neuromorphometrics_sub-0050805_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050805/mri/neuromorphometrics_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/0m/MD5E-s234244--97988b0b7e6303af5d45d1b25153660e.nii.gz/MD5E-s234244--97988b0b7e6303af5d45d1b25153660e.nii.gz

KKI/sub-0050805/mri/p0sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vx/m6/MD5E-s706527--46f5d7290f667d1d8be0bbb1d29e6c06.nii.gz/MD5E-s706527--46f5d7290f667d1d8be0bbb1d29e6c06.nii.gz

KKI/sub-0050805/mri/p1sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fp/fp/MD5E-s762716--fba89fa80bae40820f075d92b762de6e.nii.gz/MD5E-s762716--fba89fa80bae40820f075d92b762de6e.nii.gz

KKI/sub-0050805/mri/p2sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/p3sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/rp1sub-0050805_T1w_affine.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/rp2sub-0050805_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/Kw/MD5E-s319752--e0cbc6f23482a8e862b65bf53ad892c7.nii.gz/MD5E-s319752--e0cbc6f23482a8e862b65bf53ad892c7.nii.gz

KKI/sub-0050805/mri/rp3sub-0050805_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/6f/MD5E-s271415--5a6de11fc10d6128001bebc3359e57eb.nii.gz/MD5E-s271415--5a6de11fc10d6128001bebc3359e57eb.nii.gz

KKI/sub-0050805/mri/t_sub-0050805_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/vz/MD5E-s283--75ad076bb4824fb26374bab321df710a.mat/MD5E-s283--75ad076bb4824fb26374bab321df710a.mat

KKI/sub-0050805/mri/t_sub-0050805_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2q/J9/MD5E-s283--9e5579e7266f3978970d40fc6e1ccbcd.mat/MD5E-s283--9e5579e7266f3978970d40fc6e1ccbcd.mat

KKI/sub-0050805/mri/thalamus_sub-0050805_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/thalamus_sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/wj_sub-0050805_T1w.nii.gz

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KKI/sub-0050805/mri/wmisub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/wmsub-0050805_T1w.nii.gz

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KKI/sub-0050805/mri/wp0sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/wp1sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/wp2sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/wp3sub-0050805_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050805/mri/y_sub-0050805_T1w.nii.gz

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