[DATALAD RUNCMD] Compute USM/sub-0050448

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050448/anat/sub-0050448_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050448"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050448/label/catROI_sub-0050448_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/Ff/MD5E-s61478--307c28df614fc460ac499c9ea398c152.mat/MD5E-s61478--307c28df614fc460ac499c9ea398c152.mat

USM/sub-0050448/label/catROI_sub-0050448_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fp/QM/MD5E-s188882--aa6d0cbab915e81cc014a676d2d1d3f2.xml/MD5E-s188882--aa6d0cbab915e81cc014a676d2d1d3f2.xml

USM/sub-0050448/label/catROIs_sub-0050448_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vx/47/MD5E-s120010--e7d478f0d26e69b6f17713fe471cff27.mat/MD5E-s120010--e7d478f0d26e69b6f17713fe471cff27.mat

USM/sub-0050448/label/catROIs_sub-0050448_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gj/Vm/MD5E-s332196--e5764447793e48e3fe4ccef6348cbd05.xml/MD5E-s332196--e5764447793e48e3fe4ccef6348cbd05.xml

USM/sub-0050448/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050448/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/qq/MD5E-s424596--e66340f7faa2dfab8810947fc41fec85.nii.gz/MD5E-s424596--e66340f7faa2dfab8810947fc41fec85.nii.gz

USM/sub-0050448/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050448/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/xx/MD5E-s472712--f80de2d924a582f1b0f90cc1eb701bc3.nii.gz/MD5E-s472712--f80de2d924a582f1b0f90cc1eb701bc3.nii.gz

USM/sub-0050448/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050448/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F5/fK/MD5E-s680743--c35372e0b4b1be5531021549cec2224b.nii.gz/MD5E-s680743--c35372e0b4b1be5531021549cec2224b.nii.gz

USM/sub-0050448/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050448/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4G/2f/MD5E-s748444--1b1bf2b04f6f8acf3d0bb5a9ec537aad.nii.gz/MD5E-s748444--1b1bf2b04f6f8acf3d0bb5a9ec537aad.nii.gz

USM/sub-0050448/mri/Tian_Subcortex_S2_7T_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050448/mri/Tian_Subcortex_S2_7T_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8V/vx/MD5E-s70680--bc036a7464c7d25fbcecc23b2551f1a9.nii.gz/MD5E-s70680--bc036a7464c7d25fbcecc23b2551f1a9.nii.gz

USM/sub-0050448/mri/aal3_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050448/mri/aal3_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4x/7q/MD5E-s475209--3192b3f16d3e94743884b7d01f9b3355.nii.gz/MD5E-s475209--3192b3f16d3e94743884b7d01f9b3355.nii.gz

USM/sub-0050448/mri/anatomy3_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050448/mri/anatomy3_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/5z/MD5E-s355435--c9a8141aa95ddddbfbacbb6bc863285a.nii.gz/MD5E-s355435--c9a8141aa95ddddbfbacbb6bc863285a.nii.gz

USM/sub-0050448/mri/anon_misub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/51/Vk/MD5E-s17566185--f291f664d9f578710c7498146d52f7ae.nii.gz/MD5E-s17566185--f291f664d9f578710c7498146d52f7ae.nii.gz

USM/sub-0050448/mri/anon_msub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/F3/MD5E-s34323093--a6887aa33f87b82ec4feb286e134dd46.nii.gz/MD5E-s34323093--a6887aa33f87b82ec4feb286e134dd46.nii.gz

USM/sub-0050448/mri/cat_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/g7/MD5E-s261823--432013b6f9c039981db0c6381dc72b01.nii.gz/MD5E-s261823--432013b6f9c039981db0c6381dc72b01.nii.gz

USM/sub-0050448/mri/cobra_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050448/mri/cobra_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/FK/MD5E-s134338--a39ffb8ba92738288202ee94d3c63cde.nii.gz/MD5E-s134338--a39ffb8ba92738288202ee94d3c63cde.nii.gz

USM/sub-0050448/mri/hammers_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050448/mri/hammers_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9G/VQ/MD5E-s381223--49d7b10cf0136584139f7b933cc5bced.nii.gz/MD5E-s381223--49d7b10cf0136584139f7b933cc5bced.nii.gz

USM/sub-0050448/mri/ibsr_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050448/mri/ibsr_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/vQ/MD5E-s406532--8ce46641fc38af62407bcb110da1fa1c.nii.gz/MD5E-s406532--8ce46641fc38af62407bcb110da1fa1c.nii.gz

USM/sub-0050448/mri/it_sub-0050448_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f7/32/MD5E-s284--765d70e946f1dc8efc20fb5750484e54.mat/MD5E-s284--765d70e946f1dc8efc20fb5750484e54.mat

USM/sub-0050448/mri/it_sub-0050448_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/0g/MD5E-s283--5c924348828184c0198a062ee159fe69.mat/MD5E-s283--5c924348828184c0198a062ee159fe69.mat

USM/sub-0050448/mri/iy_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/W4/MD5E-s166792562--2d184bd27dc02a8285a876b1a5cb07fd.nii.gz/MD5E-s166792562--2d184bd27dc02a8285a876b1a5cb07fd.nii.gz

USM/sub-0050448/mri/julichbrain_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050448/mri/julichbrain_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vx/09/MD5E-s506664--98cbef52204227a5ff216d83ef11741d.nii.gz/MD5E-s506664--98cbef52204227a5ff216d83ef11741d.nii.gz

USM/sub-0050448/mri/lpba40_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050448/mri/lpba40_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xk/03/MD5E-s372389--bb21198a70e485e4065d6711e6f71efb.nii.gz/MD5E-s372389--bb21198a70e485e4065d6711e6f71efb.nii.gz

USM/sub-0050448/mri/m0wp1sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Q/ww/MD5E-s2576016--9f78b1851a8df0c56c0678033d6af869.nii.gz/MD5E-s2576016--9f78b1851a8df0c56c0678033d6af869.nii.gz

USM/sub-0050448/mri/m0wp2sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F2/0V/MD5E-s2278680--8e18abcf35e954ecf2f33a91dd00ef44.nii.gz/MD5E-s2278680--8e18abcf35e954ecf2f33a91dd00ef44.nii.gz

USM/sub-0050448/mri/m0wp3sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xK/9K/MD5E-s2384187--5e5726d0f9ce3204e5223d2fee85a8d5.nii.gz/MD5E-s2384187--5e5726d0f9ce3204e5223d2fee85a8d5.nii.gz

USM/sub-0050448/mri/mori_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050448/mri/mori_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050448/mri/mwp1sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w6/VW/MD5E-s2579432--d6e6b08969e1a603c004ccf8b4198115.nii.gz/MD5E-s2579432--d6e6b08969e1a603c004ccf8b4198115.nii.gz

USM/sub-0050448/mri/mwp2sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WZ/82/MD5E-s2277710--c6a073e0b6b6002ca1c431bdc9c59e14.nii.gz/MD5E-s2277710--c6a073e0b6b6002ca1c431bdc9c59e14.nii.gz

USM/sub-0050448/mri/mwp3sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/q4/MD5E-s2384209--94583a4109b2817773015e9f67351126.nii.gz/MD5E-s2384209--94583a4109b2817773015e9f67351126.nii.gz

USM/sub-0050448/mri/neuromorphometrics_sub-0050448_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050448/mri/neuromorphometrics_sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6J/MZ/MD5E-s515500--a3047ec9fd0c15ad4317ea1792cbc0a9.nii.gz/MD5E-s515500--a3047ec9fd0c15ad4317ea1792cbc0a9.nii.gz

USM/sub-0050448/mri/p0sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/4V/MD5E-s4215802--e702df67c922f63ae4d723fa131a6713.nii.gz/MD5E-s4215802--e702df67c922f63ae4d723fa131a6713.nii.gz

USM/sub-0050448/mri/p1sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/5v/MD5E-s4185559--cbb573d5d8b13365b30baec61a1af381.nii.gz/MD5E-s4185559--cbb573d5d8b13365b30baec61a1af381.nii.gz

USM/sub-0050448/mri/p2sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050448/mri/p3sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/gm/MD5E-s2471025--431d76d457f931d5caeef9cd41241080.nii.gz/MD5E-s2471025--431d76d457f931d5caeef9cd41241080.nii.gz

USM/sub-0050448/mri/rp1sub-0050448_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/Zx/MD5E-s438521--d4d14121d99c0991e9a557f9f227eeef.nii.gz/MD5E-s438521--d4d14121d99c0991e9a557f9f227eeef.nii.gz

USM/sub-0050448/mri/rp2sub-0050448_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jf/4Z/MD5E-s303758--1118881383a503b41ef9d72c6c8a680e.nii.gz/MD5E-s303758--1118881383a503b41ef9d72c6c8a680e.nii.gz

USM/sub-0050448/mri/rp3sub-0050448_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/z6/MD5E-s239357--57d556761aab93a6ab004eedf58303a4.nii.gz/MD5E-s239357--57d556761aab93a6ab004eedf58303a4.nii.gz

USM/sub-0050448/mri/t_sub-0050448_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w1/vM/MD5E-s284--1fe7b2d552f7bd59a4a25abbe96cc1f1.mat/MD5E-s284--1fe7b2d552f7bd59a4a25abbe96cc1f1.mat

USM/sub-0050448/mri/t_sub-0050448_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P1/j8/MD5E-s284--75413b9e3ffbe24b04a8f7d3db2edb9a.mat/MD5E-s284--75413b9e3ffbe24b04a8f7d3db2edb9a.mat

USM/sub-0050448/mri/thalamus_sub-0050448_T1w.csv

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USM/sub-0050448/mri/thalamus_sub-0050448_T1w.nii.gz

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USM/sub-0050448/mri/wj_sub-0050448_T1w.nii.gz

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USM/sub-0050448/mri/wmisub-0050448_T1w.nii.gz

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USM/sub-0050448/mri/wmsub-0050448_T1w.nii.gz

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USM/sub-0050448/mri/wp0sub-0050448_T1w.nii.gz

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USM/sub-0050448/mri/wp1sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050448/mri/wp2sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050448/mri/wp3sub-0050448_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050448/mri/y_sub-0050448_T1w.nii.gz

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