[DATALAD RUNCMD] Compute UM_2/sub-0050405

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050405/anat/sub-0050405_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050405"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050405/label/catROI_sub-0050405_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/72/FF/MD5E-s58166--e899180df0f9e2b7886ecd9974aced7e.mat/MD5E-s58166--e899180df0f9e2b7886ecd9974aced7e.mat

UM_2/sub-0050405/label/catROI_sub-0050405_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/2g/MD5E-s188862--86007b3bcfa37682f3062f8275c883c1.xml/MD5E-s188862--86007b3bcfa37682f3062f8275c883c1.xml

UM_2/sub-0050405/label/catROIs_sub-0050405_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/75/j9/MD5E-s120134--d8a8807b8204ccd12a29f98bb66de8e4.mat/MD5E-s120134--d8a8807b8204ccd12a29f98bb66de8e4.mat

UM_2/sub-0050405/label/catROIs_sub-0050405_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JX/G2/MD5E-s332116--62bab0430b49bf60a8cdb6a1db927ef4.xml/MD5E-s332116--62bab0430b49bf60a8cdb6a1db927ef4.xml

UM_2/sub-0050405/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050405/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2v/2X/MD5E-s131959--145c14760c39e80e26036d73d0787b43.nii.gz/MD5E-s131959--145c14760c39e80e26036d73d0787b43.nii.gz

UM_2/sub-0050405/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050405/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gj/JP/MD5E-s146746--77a64e4b86157dcca0a9f6ec8e8b62cc.nii.gz/MD5E-s146746--77a64e4b86157dcca0a9f6ec8e8b62cc.nii.gz

UM_2/sub-0050405/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050405/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XK/jj/MD5E-s204401--af4c99677cd91ae2dc7c7caefe84d26d.nii.gz/MD5E-s204401--af4c99677cd91ae2dc7c7caefe84d26d.nii.gz

UM_2/sub-0050405/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050405/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9v/W1/MD5E-s226024--6f26edcbfec3cb499d28b871bde89765.nii.gz/MD5E-s226024--6f26edcbfec3cb499d28b871bde89765.nii.gz

UM_2/sub-0050405/mri/Tian_Subcortex_S2_7T_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050405/mri/Tian_Subcortex_S2_7T_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f4/8g/MD5E-s16920--03c6fa77aa8267970f0fbcb6d62d0f1b.nii.gz/MD5E-s16920--03c6fa77aa8267970f0fbcb6d62d0f1b.nii.gz

UM_2/sub-0050405/mri/aal3_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050405/mri/aal3_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/anatomy3_sub-0050405_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050405/mri/anatomy3_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/pz/MD5E-s104256--34180569c43c52108766f740cd4cab77.nii.gz/MD5E-s104256--34180569c43c52108766f740cd4cab77.nii.gz

UM_2/sub-0050405/mri/anon_misub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050405/mri/anon_msub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/gk/MD5E-s5406611--a24d12a3a95fc2ac55c9abe733c8ff6a.nii.gz/MD5E-s5406611--a24d12a3a95fc2ac55c9abe733c8ff6a.nii.gz

UM_2/sub-0050405/mri/cat_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X3/q2/MD5E-s76906--8cb4ea14b4165579142fbb44356b8dde.nii.gz/MD5E-s76906--8cb4ea14b4165579142fbb44356b8dde.nii.gz

UM_2/sub-0050405/mri/cobra_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050405/mri/cobra_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050405/mri/hammers_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050405/mri/hammers_sub-0050405_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050405/mri/ibsr_sub-0050405_T1w.csv

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UM_2/sub-0050405/mri/ibsr_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/it_sub-0050405_T1w_affine_reorient.mat

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UM_2/sub-0050405/mri/it_sub-0050405_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/5k/MD5E-s284--2192e558e48015d492861a5b64a8beb8.mat/MD5E-s284--2192e558e48015d492861a5b64a8beb8.mat

UM_2/sub-0050405/mri/iy_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/julichbrain_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050405/mri/julichbrain_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/lpba40_sub-0050405_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050405/mri/lpba40_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/m0wp1sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/m0wp2sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/m0wp3sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/mori_sub-0050405_T1w.csv

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UM_2/sub-0050405/mri/mori_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/mwp1sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/mwp2sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/mwp3sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/neuromorphometrics_sub-0050405_T1w.csv

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UM_2/sub-0050405/mri/neuromorphometrics_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/p0sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/p1sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/p2sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/p3sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/rp1sub-0050405_T1w_affine.nii.gz

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UM_2/sub-0050405/mri/rp2sub-0050405_T1w_affine.nii.gz

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UM_2/sub-0050405/mri/rp3sub-0050405_T1w_affine.nii.gz

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UM_2/sub-0050405/mri/t_sub-0050405_T1w_affine_reorient.mat

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UM_2/sub-0050405/mri/t_sub-0050405_T1w_rigid_reorient.mat

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UM_2/sub-0050405/mri/thalamus_sub-0050405_T1w.csv

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UM_2/sub-0050405/mri/thalamus_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wj_sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wmisub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wmsub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wp0sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wp1sub-0050405_T1w.nii.gz

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UM_2/sub-0050405/mri/wp2sub-0050405_T1w.nii.gz

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