[DATALAD RUNCMD] Compute Leuven_2/sub-0050747

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050747/anat/sub-0050747_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050747"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050747/label/catROI_sub-0050747_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qp/K0/MD5E-s61336--78e645545a615b343714b5de276a992c.mat/MD5E-s61336--78e645545a615b343714b5de276a992c.mat

Leuven_2/sub-0050747/label/catROI_sub-0050747_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/pM/MD5E-s188759--201ea6d7e2bd950299e24ef383910cdd.xml/MD5E-s188759--201ea6d7e2bd950299e24ef383910cdd.xml

Leuven_2/sub-0050747/label/catROIs_sub-0050747_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gz/VQ/MD5E-s120123--6385df8de9f8426268b3a2084c31eddc.mat/MD5E-s120123--6385df8de9f8426268b3a2084c31eddc.mat

Leuven_2/sub-0050747/label/catROIs_sub-0050747_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/q3/MD5E-s332144--643fdfc556f69cc47aae265df3e3823e.xml/MD5E-s332144--643fdfc556f69cc47aae265df3e3823e.xml

Leuven_2/sub-0050747/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050747/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p5/Wg/MD5E-s177993--33d61062dab87f8fbd862fce479dfa58.nii.gz/MD5E-s177993--33d61062dab87f8fbd862fce479dfa58.nii.gz

Leuven_2/sub-0050747/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050747/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/8K/MD5E-s199590--d9dd348ebae0805060ccfbf346c0c960.nii.gz/MD5E-s199590--d9dd348ebae0805060ccfbf346c0c960.nii.gz

Leuven_2/sub-0050747/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050747/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/ZZ/MD5E-s253317--c64ab13b2b4632180d43d5b61b967e78.nii.gz/MD5E-s253317--c64ab13b2b4632180d43d5b61b967e78.nii.gz

Leuven_2/sub-0050747/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050747/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7g/24/MD5E-s282297--d8bfc122e9d8a347f7fc107df20963e9.nii.gz/MD5E-s282297--d8bfc122e9d8a347f7fc107df20963e9.nii.gz

Leuven_2/sub-0050747/mri/Tian_Subcortex_S2_7T_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050747/mri/Tian_Subcortex_S2_7T_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jg/pp/MD5E-s26834--182f8f0611723453c1502e8796766bea.nii.gz/MD5E-s26834--182f8f0611723453c1502e8796766bea.nii.gz

Leuven_2/sub-0050747/mri/aal3_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050747/mri/aal3_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/anatomy3_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050747/mri/anatomy3_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/anon_misub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/85/MD5E-s5051370--a2c6881da156425fc5ae98101089a020.nii.gz/MD5E-s5051370--a2c6881da156425fc5ae98101089a020.nii.gz

Leuven_2/sub-0050747/mri/anon_msub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/gX/MD5E-s11578602--6739c14b9dd06fada2c6c4b54f6dc2ed.nii.gz/MD5E-s11578602--6739c14b9dd06fada2c6c4b54f6dc2ed.nii.gz

Leuven_2/sub-0050747/mri/cat_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vf/zV/MD5E-s108033--2bb358103925863cb91b5a07dc43bfd3.nii.gz/MD5E-s108033--2bb358103925863cb91b5a07dc43bfd3.nii.gz

Leuven_2/sub-0050747/mri/cobra_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050747/mri/cobra_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q7/KP/MD5E-s50657--f627907266b5a1938e146c205ca0b5f5.nii.gz/MD5E-s50657--f627907266b5a1938e146c205ca0b5f5.nii.gz

Leuven_2/sub-0050747/mri/hammers_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050747/mri/hammers_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/ibsr_sub-0050747_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050747/mri/ibsr_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/it_sub-0050747_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/14/k5/MD5E-s283--3942d232d2106fce1552b08d88b0af3e.mat/MD5E-s283--3942d232d2106fce1552b08d88b0af3e.mat

Leuven_2/sub-0050747/mri/it_sub-0050747_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vG/Wj/MD5E-s284--00217dae738b1a68179ef7228efe09ff.mat/MD5E-s284--00217dae738b1a68179ef7228efe09ff.mat

Leuven_2/sub-0050747/mri/iy_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/8z/MD5E-s44704486--93d3ae271c1b21e31dc40734b0e3d970.nii.gz/MD5E-s44704486--93d3ae271c1b21e31dc40734b0e3d970.nii.gz

Leuven_2/sub-0050747/mri/julichbrain_sub-0050747_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/julichbrain_sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/lpba40_sub-0050747_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/lpba40_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/m0wp1sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/m0wp2sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/m0wp3sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/mori_sub-0050747_T1w.csv

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Leuven_2/sub-0050747/mri/mori_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/mwp1sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/mwp2sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/mwp3sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/neuromorphometrics_sub-0050747_T1w.csv

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Leuven_2/sub-0050747/mri/neuromorphometrics_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/p0sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/p1sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/p2sub-0050747_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050747/mri/p3sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/rp1sub-0050747_T1w_affine.nii.gz

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Leuven_2/sub-0050747/mri/rp2sub-0050747_T1w_affine.nii.gz

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Leuven_2/sub-0050747/mri/rp3sub-0050747_T1w_affine.nii.gz

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Leuven_2/sub-0050747/mri/t_sub-0050747_T1w_affine_reorient.mat

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Leuven_2/sub-0050747/mri/t_sub-0050747_T1w_rigid_reorient.mat

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Leuven_2/sub-0050747/mri/thalamus_sub-0050747_T1w.csv

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Leuven_2/sub-0050747/mri/thalamus_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/wj_sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/wmisub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/wmsub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/wp0sub-0050747_T1w.nii.gz

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Leuven_2/sub-0050747/mri/wp1sub-0050747_T1w.nii.gz

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