[DATALAD RUNCMD] Compute USM/sub-0050473

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050473/anat/sub-0050473_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050473"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050473/label/catROI_sub-0050473_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pJ/P0/MD5E-s61456--e09d08c279607afec7d3377ac094dafd.mat/MD5E-s61456--e09d08c279607afec7d3377ac094dafd.mat

USM/sub-0050473/label/catROI_sub-0050473_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/44/vz/MD5E-s188849--2740befb883c062638bf3b734d59ecf8.xml/MD5E-s188849--2740befb883c062638bf3b734d59ecf8.xml

USM/sub-0050473/label/catROIs_sub-0050473_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xK/95/MD5E-s120126--96af74213e74085351b139beb72cd457.mat/MD5E-s120126--96af74213e74085351b139beb72cd457.mat

USM/sub-0050473/label/catROIs_sub-0050473_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/4Q/MD5E-s332096--08a2727a4ed5db5b2c5c636061b2357e.xml/MD5E-s332096--08a2727a4ed5db5b2c5c636061b2357e.xml

USM/sub-0050473/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050473/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/4w/MD5E-s436921--fd9483e2a5bc4d78951e53316309998e.nii.gz/MD5E-s436921--fd9483e2a5bc4d78951e53316309998e.nii.gz

USM/sub-0050473/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050473/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4J/fQ/MD5E-s488887--faeeeb641fd6251837fb9a830f6146b3.nii.gz/MD5E-s488887--faeeeb641fd6251837fb9a830f6146b3.nii.gz

USM/sub-0050473/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050473/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/14/K4/MD5E-s701383--5f700e5346e2f41d3e9a77dc9fb4a62e.nii.gz/MD5E-s701383--5f700e5346e2f41d3e9a77dc9fb4a62e.nii.gz

USM/sub-0050473/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050473/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F4/Gp/MD5E-s771046--019abdc07838d19203c421d3ee9c0e81.nii.gz/MD5E-s771046--019abdc07838d19203c421d3ee9c0e81.nii.gz

USM/sub-0050473/mri/Tian_Subcortex_S2_7T_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050473/mri/Tian_Subcortex_S2_7T_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/5Z/MD5E-s70242--7548d94e67c199817ad28755d70af7ea.nii.gz/MD5E-s70242--7548d94e67c199817ad28755d70af7ea.nii.gz

USM/sub-0050473/mri/aal3_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050473/mri/aal3_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/82/0g/MD5E-s489786--78f7db51818e65683f9ee383a3a54d33.nii.gz/MD5E-s489786--78f7db51818e65683f9ee383a3a54d33.nii.gz

USM/sub-0050473/mri/anatomy3_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050473/mri/anatomy3_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/25/MD5E-s366421--67f2659fc97762104169d0b43dbaeeee.nii.gz/MD5E-s366421--67f2659fc97762104169d0b43dbaeeee.nii.gz

USM/sub-0050473/mri/anon_misub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/kk/MD5E-s20086498--87a67b5c307210218066a9efbe13e3ae.nii.gz/MD5E-s20086498--87a67b5c307210218066a9efbe13e3ae.nii.gz

USM/sub-0050473/mri/anon_msub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/P4/MD5E-s34956324--4929502ecad8dbf569dccaeee4915a6f.nii.gz/MD5E-s34956324--4929502ecad8dbf569dccaeee4915a6f.nii.gz

USM/sub-0050473/mri/cat_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8J/j2/MD5E-s273989--aa518c7fa0e258ddb896129c14e0212f.nii.gz/MD5E-s273989--aa518c7fa0e258ddb896129c14e0212f.nii.gz

USM/sub-0050473/mri/cobra_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050473/mri/cobra_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/Z5/MD5E-s134165--4b2d9df0e408ed2ac606baae0910853f.nii.gz/MD5E-s134165--4b2d9df0e408ed2ac606baae0910853f.nii.gz

USM/sub-0050473/mri/hammers_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050473/mri/hammers_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mx/m5/MD5E-s390175--646e7021fed87186d94bc8996cbbf5da.nii.gz/MD5E-s390175--646e7021fed87186d94bc8996cbbf5da.nii.gz

USM/sub-0050473/mri/ibsr_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050473/mri/ibsr_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4x/m8/MD5E-s417760--4a3b3dd19044caf60b146dfb9652a28d.nii.gz/MD5E-s417760--4a3b3dd19044caf60b146dfb9652a28d.nii.gz

USM/sub-0050473/mri/it_sub-0050473_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xf/Zf/MD5E-s283--0e17ffa7b322d18f5ded8147d78b9cbf.mat/MD5E-s283--0e17ffa7b322d18f5ded8147d78b9cbf.mat

USM/sub-0050473/mri/it_sub-0050473_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/Gg/MD5E-s282--2b7fdc11e2ed72c064970b011ef91e21.mat/MD5E-s282--2b7fdc11e2ed72c064970b011ef91e21.mat

USM/sub-0050473/mri/iy_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/5g/MD5E-s181116538--faa90b6a28c63243193217e7686f2682.nii.gz/MD5E-s181116538--faa90b6a28c63243193217e7686f2682.nii.gz

USM/sub-0050473/mri/julichbrain_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050473/mri/julichbrain_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1q/Jv/MD5E-s519150--bd1df5f16c5a1b029ff6f651db494eee.nii.gz/MD5E-s519150--bd1df5f16c5a1b029ff6f651db494eee.nii.gz

USM/sub-0050473/mri/lpba40_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050473/mri/lpba40_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/41/z1/MD5E-s383673--025a502ea49698c4ed044cce15672208.nii.gz/MD5E-s383673--025a502ea49698c4ed044cce15672208.nii.gz

USM/sub-0050473/mri/m0wp1sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5K/7w/MD5E-s2564748--da7e2c5c250d2f2432eeb9cd866b400b.nii.gz/MD5E-s2564748--da7e2c5c250d2f2432eeb9cd866b400b.nii.gz

USM/sub-0050473/mri/m0wp2sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/gW/MD5E-s2287067--6a8885ec65c398ce3fd924b5739cf559.nii.gz/MD5E-s2287067--6a8885ec65c398ce3fd924b5739cf559.nii.gz

USM/sub-0050473/mri/m0wp3sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q2/VJ/MD5E-s2569889--853b06698efa23d398c5551a8aa02a29.nii.gz/MD5E-s2569889--853b06698efa23d398c5551a8aa02a29.nii.gz

USM/sub-0050473/mri/mori_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050473/mri/mori_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/mwp1sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/00/MD5E-s2565323--5b0ccec776e4fee1cdc0e2316dfc076a.nii.gz/MD5E-s2565323--5b0ccec776e4fee1cdc0e2316dfc076a.nii.gz

USM/sub-0050473/mri/mwp2sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/mwp3sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/Zx/MD5E-s2570040--1d91d86d4f6d6cdad29b9c2ca8f8cc3c.nii.gz/MD5E-s2570040--1d91d86d4f6d6cdad29b9c2ca8f8cc3c.nii.gz

USM/sub-0050473/mri/neuromorphometrics_sub-0050473_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050473/mri/neuromorphometrics_sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/xZ/MD5E-s530356--d4bebc49807d58e4df6ce428d2102720.nii.gz/MD5E-s530356--d4bebc49807d58e4df6ce428d2102720.nii.gz

USM/sub-0050473/mri/p0sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pj/gm/MD5E-s4666278--0b171ae2d627fee6e320c2c5c4f34f5e.nii.gz/MD5E-s4666278--0b171ae2d627fee6e320c2c5c4f34f5e.nii.gz

USM/sub-0050473/mri/p1sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/ff/MD5E-s4456863--1e382ce4845c012d68e0dfc513608a57.nii.gz/MD5E-s4456863--1e382ce4845c012d68e0dfc513608a57.nii.gz

USM/sub-0050473/mri/p2sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8V/gQ/MD5E-s3022883--e25e5015527d8055f79aa950b852369b.nii.gz/MD5E-s3022883--e25e5015527d8055f79aa950b852369b.nii.gz

USM/sub-0050473/mri/p3sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/rp1sub-0050473_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zx/g7/MD5E-s428970--68bbce8e4f0b07725d81922ac30e4050.nii.gz/MD5E-s428970--68bbce8e4f0b07725d81922ac30e4050.nii.gz

USM/sub-0050473/mri/rp2sub-0050473_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/06/MD5E-s277862--663860a8c79c2b4b71a022f6dcfda55d.nii.gz/MD5E-s277862--663860a8c79c2b4b71a022f6dcfda55d.nii.gz

USM/sub-0050473/mri/rp3sub-0050473_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mm/1q/MD5E-s293168--ceb97f2c61fc59f043674a4c663db5b3.nii.gz/MD5E-s293168--ceb97f2c61fc59f043674a4c663db5b3.nii.gz

USM/sub-0050473/mri/t_sub-0050473_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F9/31/MD5E-s283--882fd080ea620b92a348bc4e9dc049c7.mat/MD5E-s283--882fd080ea620b92a348bc4e9dc049c7.mat

USM/sub-0050473/mri/t_sub-0050473_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kJ/76/MD5E-s283--86f21b3a006dcbd3118af2ec12748d14.mat/MD5E-s283--86f21b3a006dcbd3118af2ec12748d14.mat

USM/sub-0050473/mri/thalamus_sub-0050473_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050473/mri/thalamus_sub-0050473_T1w.nii.gz

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USM/sub-0050473/mri/wj_sub-0050473_T1w.nii.gz

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USM/sub-0050473/mri/wmisub-0050473_T1w.nii.gz

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USM/sub-0050473/mri/wmsub-0050473_T1w.nii.gz

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USM/sub-0050473/mri/wp0sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/wp1sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/wp2sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/wp3sub-0050473_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050473/mri/y_sub-0050473_T1w.nii.gz

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