[DATALAD RUNCMD] Compute Olin/sub-0050111

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050111/anat/sub-0050111_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050111"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050111/label/catROI_sub-0050111_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/40/WW/MD5E-s61416--35bd500f31c83a8d443d5c086f32cf11.mat/MD5E-s61416--35bd500f31c83a8d443d5c086f32cf11.mat

Olin/sub-0050111/label/catROI_sub-0050111_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/QQ/GQ/MD5E-s188902--91701db9b20950cb3c6ab4105fb46675.xml/MD5E-s188902--91701db9b20950cb3c6ab4105fb46675.xml

Olin/sub-0050111/label/catROIs_sub-0050111_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jF/0K/MD5E-s120288--ed30238463272fb931230845b2ef1642.mat/MD5E-s120288--ed30238463272fb931230845b2ef1642.mat

Olin/sub-0050111/label/catROIs_sub-0050111_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/9p/MD5E-s332144--ef47e1dc27e66f53651aee72fdaf1e57.xml/MD5E-s332144--ef47e1dc27e66f53651aee72fdaf1e57.xml

Olin/sub-0050111/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050111/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/76/0m/MD5E-s177238--ec8361310d0bf5a587ef194ce6b86ed5.nii.gz/MD5E-s177238--ec8361310d0bf5a587ef194ce6b86ed5.nii.gz

Olin/sub-0050111/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050111/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/Qw/MD5E-s198056--bd368650dadd0a0a2d394977217971e1.nii.gz/MD5E-s198056--bd368650dadd0a0a2d394977217971e1.nii.gz

Olin/sub-0050111/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050111/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5j/3Q/MD5E-s257052--783e925a90995c2e4eae460a784a3f7b.nii.gz/MD5E-s257052--783e925a90995c2e4eae460a784a3f7b.nii.gz

Olin/sub-0050111/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050111/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mz/W9/MD5E-s286789--4422bbd40bc4fc85e3e760d51ddf5dc9.nii.gz/MD5E-s286789--4422bbd40bc4fc85e3e760d51ddf5dc9.nii.gz

Olin/sub-0050111/mri/Tian_Subcortex_S2_7T_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050111/mri/Tian_Subcortex_S2_7T_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/pp/MD5E-s24294--5f7cd1536f351e75d43a39b956773d13.nii.gz/MD5E-s24294--5f7cd1536f351e75d43a39b956773d13.nii.gz

Olin/sub-0050111/mri/aal3_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Olin/sub-0050111/mri/aal3_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/anatomy3_sub-0050111_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050111/mri/anatomy3_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/MQ/MD5E-s145417--1743e28743a20282968a23fbb6ca7e22.nii.gz/MD5E-s145417--1743e28743a20282968a23fbb6ca7e22.nii.gz

Olin/sub-0050111/mri/anon_misub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xf/Pw/MD5E-s4866050--75511c484b6150b0fbab0c453b3a171e.nii.gz/MD5E-s4866050--75511c484b6150b0fbab0c453b3a171e.nii.gz

Olin/sub-0050111/mri/anon_msub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x0/0J/MD5E-s9810693--57ee46c4d1e7651bcbcb02cab4cc1b1d.nii.gz/MD5E-s9810693--57ee46c4d1e7651bcbcb02cab4cc1b1d.nii.gz

Olin/sub-0050111/mri/cat_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jv/M1/MD5E-s102761--299858d126ab8e15abe0f2737db6deb7.nii.gz/MD5E-s102761--299858d126ab8e15abe0f2737db6deb7.nii.gz

Olin/sub-0050111/mri/cobra_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050111/mri/cobra_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/6z/MD5E-s49739--6200f1ef28e30094fcc2ceb55e75b664.nii.gz/MD5E-s49739--6200f1ef28e30094fcc2ceb55e75b664.nii.gz

Olin/sub-0050111/mri/hammers_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050111/mri/hammers_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mJ/0M/MD5E-s152142--2b17d20042548f106c3114d77b3af227.nii.gz/MD5E-s152142--2b17d20042548f106c3114d77b3af227.nii.gz

Olin/sub-0050111/mri/ibsr_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050111/mri/ibsr_sub-0050111_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/Mz/MD5E-s162415--173be7655e2f3cabc8eb8b0683073ed0.nii.gz/MD5E-s162415--173be7655e2f3cabc8eb8b0683073ed0.nii.gz

Olin/sub-0050111/mri/it_sub-0050111_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/42/Z4/MD5E-s284--80fbac8dec9103e593a6341c0cfcde96.mat/MD5E-s284--80fbac8dec9103e593a6341c0cfcde96.mat

Olin/sub-0050111/mri/it_sub-0050111_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/Vg/MD5E-s283--a38138a0087f07d7d25aa557f8e0b9c8.mat/MD5E-s283--a38138a0087f07d7d25aa557f8e0b9c8.mat

Olin/sub-0050111/mri/iy_sub-0050111_T1w.nii.gz

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+../../../.git/annex/objects/54/Wm/MD5E-s47244627--b999d373aca193253737c5a25a65148a.nii.gz/MD5E-s47244627--b999d373aca193253737c5a25a65148a.nii.gz

Olin/sub-0050111/mri/julichbrain_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050111/mri/julichbrain_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/lpba40_sub-0050111_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050111/mri/lpba40_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/m0wp1sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/m0wp2sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/m0wp3sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/mori_sub-0050111_T1w.csv

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Olin/sub-0050111/mri/mori_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/mwp1sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/mwp2sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/mwp3sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/neuromorphometrics_sub-0050111_T1w.csv

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Olin/sub-0050111/mri/neuromorphometrics_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/p0sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/p1sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/p2sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/p3sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/rp1sub-0050111_T1w_affine.nii.gz

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Olin/sub-0050111/mri/rp2sub-0050111_T1w_affine.nii.gz

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Olin/sub-0050111/mri/rp3sub-0050111_T1w_affine.nii.gz

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Olin/sub-0050111/mri/t_sub-0050111_T1w_affine_reorient.mat

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Olin/sub-0050111/mri/t_sub-0050111_T1w_rigid_reorient.mat

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Olin/sub-0050111/mri/thalamus_sub-0050111_T1w.csv

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Olin/sub-0050111/mri/thalamus_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wj_sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wmisub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wmsub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wp0sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wp1sub-0050111_T1w.nii.gz

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Olin/sub-0050111/mri/wp2sub-0050111_T1w.nii.gz

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