[DATALAD RUNCMD] Compute MaxMun_a/sub-0051369

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_a/sub-0051369/anat/sub-0051369_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_a/sub-0051369"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_a/sub-0051369/label/catROI_sub-0051369_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mf/pG/MD5E-s58227--bf152bf5fa9bf3f0ef02f36ad85a09cf.mat/MD5E-s58227--bf152bf5fa9bf3f0ef02f36ad85a09cf.mat

MaxMun_a/sub-0051369/label/catROI_sub-0051369_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/2Z/MD5E-s188584--20399ef33b691ac81cba047eb0675041.xml/MD5E-s188584--20399ef33b691ac81cba047eb0675041.xml

MaxMun_a/sub-0051369/label/catROIs_sub-0051369_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/3f/MD5E-s120057--39e411809c60948bd65457c0d61af3e5.mat/MD5E-s120057--39e411809c60948bd65457c0d61af3e5.mat

MaxMun_a/sub-0051369/label/catROIs_sub-0051369_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/v9/MD5E-s332036--c9b5e21c5ad60d3caa129b52fee82144.xml/MD5E-s332036--c9b5e21c5ad60d3caa129b52fee82144.xml

MaxMun_a/sub-0051369/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_a/sub-0051369/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/fQ/MD5E-s178712--5da396f0f8ea44e34acf16fb9e336fee.nii.gz/MD5E-s178712--5da396f0f8ea44e34acf16fb9e336fee.nii.gz

MaxMun_a/sub-0051369/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_a/sub-0051369/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/Jp/MD5E-s200037--0f972e606a8c12790e3f158af519c5c2.nii.gz/MD5E-s200037--0f972e606a8c12790e3f158af519c5c2.nii.gz

MaxMun_a/sub-0051369/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_a/sub-0051369/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/QK/MD5E-s269002--5e36d24a000e3411993d0b28102c2a11.nii.gz/MD5E-s269002--5e36d24a000e3411993d0b28102c2a11.nii.gz

MaxMun_a/sub-0051369/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_a/sub-0051369/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PX/mW/MD5E-s299662--af64dbb67e3713b3747e0aa75113833a.nii.gz/MD5E-s299662--af64dbb67e3713b3747e0aa75113833a.nii.gz

MaxMun_a/sub-0051369/mri/Tian_Subcortex_S2_7T_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_a/sub-0051369/mri/Tian_Subcortex_S2_7T_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3k/qk/MD5E-s23274--44239d8de4e72d9d3f35abdcdbfafdd8.nii.gz/MD5E-s23274--44239d8de4e72d9d3f35abdcdbfafdd8.nii.gz

MaxMun_a/sub-0051369/mri/aal3_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_a/sub-0051369/mri/aal3_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/MJ/MD5E-s200740--c7ece8d37aba6fde4527c30680364117.nii.gz/MD5E-s200740--c7ece8d37aba6fde4527c30680364117.nii.gz

MaxMun_a/sub-0051369/mri/anatomy3_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_a/sub-0051369/mri/anatomy3_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/8v/MD5E-s145425--a9b156786b3b0f9afa927f715636eb1d.nii.gz/MD5E-s145425--a9b156786b3b0f9afa927f715636eb1d.nii.gz

MaxMun_a/sub-0051369/mri/anon_misub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vj/9w/MD5E-s8340362--9080ee2a84f8fd2deafba7befbf3bc73.nii.gz/MD5E-s8340362--9080ee2a84f8fd2deafba7befbf3bc73.nii.gz

MaxMun_a/sub-0051369/mri/anon_msub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q2/gQ/MD5E-s9086351--88c75fe107f6b23733bc71d547586ef7.nii.gz/MD5E-s9086351--88c75fe107f6b23733bc71d547586ef7.nii.gz

MaxMun_a/sub-0051369/mri/cat_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g3/q6/MD5E-s110182--035365319538bb1291987b239be2761e.nii.gz/MD5E-s110182--035365319538bb1291987b239be2761e.nii.gz

MaxMun_a/sub-0051369/mri/cobra_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_a/sub-0051369/mri/cobra_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vZ/PP/MD5E-s48983--5d86c2ca20e0cf65d2e1d159d95a3517.nii.gz/MD5E-s48983--5d86c2ca20e0cf65d2e1d159d95a3517.nii.gz

MaxMun_a/sub-0051369/mri/hammers_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_a/sub-0051369/mri/hammers_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fq/kp/MD5E-s159740--d44f3d08fe3f9ab4f23b45c48b844f63.nii.gz/MD5E-s159740--d44f3d08fe3f9ab4f23b45c48b844f63.nii.gz

MaxMun_a/sub-0051369/mri/ibsr_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_a/sub-0051369/mri/ibsr_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/Mp/MD5E-s166494--cabf8e004522c75489aa0558f68d80fb.nii.gz/MD5E-s166494--cabf8e004522c75489aa0558f68d80fb.nii.gz

MaxMun_a/sub-0051369/mri/it_sub-0051369_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/Wx/MD5E-s281--5042b68bb9871a9a4dabb50df331a3a3.mat/MD5E-s281--5042b68bb9871a9a4dabb50df331a3a3.mat

MaxMun_a/sub-0051369/mri/it_sub-0051369_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/vJ/MD5E-s283--039f20651ced022bf8692fca0e9fd3c6.mat/MD5E-s283--039f20651ced022bf8692fca0e9fd3c6.mat

MaxMun_a/sub-0051369/mri/iy_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qj/vG/MD5E-s48585081--8bf523273232745f764b90e49dbedb15.nii.gz/MD5E-s48585081--8bf523273232745f764b90e49dbedb15.nii.gz

MaxMun_a/sub-0051369/mri/julichbrain_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_a/sub-0051369/mri/julichbrain_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3w/WK/MD5E-s217149--57feceaa14145c888b0cb491e83a4ba0.nii.gz/MD5E-s217149--57feceaa14145c888b0cb491e83a4ba0.nii.gz

MaxMun_a/sub-0051369/mri/lpba40_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_a/sub-0051369/mri/lpba40_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vv/wV/MD5E-s155558--d21ead78af52ba245efbb37e1a8fc389.nii.gz/MD5E-s155558--d21ead78af52ba245efbb37e1a8fc389.nii.gz

MaxMun_a/sub-0051369/mri/m0wp1sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G1/KM/MD5E-s2585882--245ecf14fc26a53895298b51dadc80cf.nii.gz/MD5E-s2585882--245ecf14fc26a53895298b51dadc80cf.nii.gz

MaxMun_a/sub-0051369/mri/m0wp2sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0f/97/MD5E-s2324440--7302469a0aa96c0f1ad17cc508ca00a3.nii.gz/MD5E-s2324440--7302469a0aa96c0f1ad17cc508ca00a3.nii.gz

MaxMun_a/sub-0051369/mri/m0wp3sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W5/mZ/MD5E-s2601580--20ee09422e0bb79563d7e6f89f5cdb91.nii.gz/MD5E-s2601580--20ee09422e0bb79563d7e6f89f5cdb91.nii.gz

MaxMun_a/sub-0051369/mri/mori_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_a/sub-0051369/mri/mori_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qP/1v/MD5E-s186262--6937c149abeb1cca66a8c0f2df5a6072.nii.gz/MD5E-s186262--6937c149abeb1cca66a8c0f2df5a6072.nii.gz

MaxMun_a/sub-0051369/mri/mwp1sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/10/J8/MD5E-s2585446--1dc6d80a4ca4238d1678864f2f02d355.nii.gz/MD5E-s2585446--1dc6d80a4ca4238d1678864f2f02d355.nii.gz

MaxMun_a/sub-0051369/mri/mwp2sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/7V/MD5E-s2319152--90acf67e0e192cf4a3ccb81f3647e417.nii.gz/MD5E-s2319152--90acf67e0e192cf4a3ccb81f3647e417.nii.gz

MaxMun_a/sub-0051369/mri/mwp3sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3M/kw/MD5E-s2597945--0fdf80b03e2ae5332fd770ab4f31d365.nii.gz/MD5E-s2597945--0fdf80b03e2ae5332fd770ab4f31d365.nii.gz

MaxMun_a/sub-0051369/mri/neuromorphometrics_sub-0051369_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_a/sub-0051369/mri/neuromorphometrics_sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X4/9v/MD5E-s217808--23813931947c2d5098c216e40b47c2ea.nii.gz/MD5E-s217808--23813931947c2d5098c216e40b47c2ea.nii.gz

MaxMun_a/sub-0051369/mri/p0sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1J/F1/MD5E-s717367--6709e3591767cd9fd0b56e0f2167c0fc.nii.gz/MD5E-s717367--6709e3591767cd9fd0b56e0f2167c0fc.nii.gz

MaxMun_a/sub-0051369/mri/p1sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/7F/MD5E-s761738--c827fa0857563ad093e1533da46f956c.nii.gz/MD5E-s761738--c827fa0857563ad093e1533da46f956c.nii.gz

MaxMun_a/sub-0051369/mri/p2sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wV/pK/MD5E-s500706--e84240dbcb4a0e779a32bad34fc8f409.nii.gz/MD5E-s500706--e84240dbcb4a0e779a32bad34fc8f409.nii.gz

MaxMun_a/sub-0051369/mri/p3sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/rp1sub-0051369_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/Kw/MD5E-s459697--2931d74614c97903e9ef723d61f2724e.nii.gz/MD5E-s459697--2931d74614c97903e9ef723d61f2724e.nii.gz

MaxMun_a/sub-0051369/mri/rp2sub-0051369_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/vZ/MD5E-s318863--df4af412ecf258edec259f4123125c0c.nii.gz/MD5E-s318863--df4af412ecf258edec259f4123125c0c.nii.gz

MaxMun_a/sub-0051369/mri/rp3sub-0051369_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j0/W6/MD5E-s303002--8a0ec70a13949d69cda689293f98d0d7.nii.gz/MD5E-s303002--8a0ec70a13949d69cda689293f98d0d7.nii.gz

MaxMun_a/sub-0051369/mri/t_sub-0051369_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/t_sub-0051369_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/4M/MD5E-s284--df1a6172d62dc40be6d1c830041023ef.mat/MD5E-s284--df1a6172d62dc40be6d1c830041023ef.mat

MaxMun_a/sub-0051369/mri/thalamus_sub-0051369_T1w.csv

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MaxMun_a/sub-0051369/mri/thalamus_sub-0051369_T1w.nii.gz

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MaxMun_a/sub-0051369/mri/wj_sub-0051369_T1w.nii.gz

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MaxMun_a/sub-0051369/mri/wmisub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/wmsub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/wp0sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/wp1sub-0051369_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051369/mri/wp2sub-0051369_T1w.nii.gz

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MaxMun_a/sub-0051369/report/catlog_sub-0051369_T1w.nii.txt

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