[DATALAD RUNCMD] Compute KKI/sub-0050803

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050803/anat/sub-0050803_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050803"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050803/label/catROI_sub-0050803_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J7/8f/MD5E-s61396--9be80cce7a90f553477d97912a8a982f.mat/MD5E-s61396--9be80cce7a90f553477d97912a8a982f.mat

KKI/sub-0050803/label/catROI_sub-0050803_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1K/6q/MD5E-s188774--dd9638af59c257609ce2b82aa4ae8129.xml/MD5E-s188774--dd9638af59c257609ce2b82aa4ae8129.xml

KKI/sub-0050803/label/catROIs_sub-0050803_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pK/XV/MD5E-s120133--60ac2c340748eeed573461d97efe1b0e.mat/MD5E-s120133--60ac2c340748eeed573461d97efe1b0e.mat

KKI/sub-0050803/label/catROIs_sub-0050803_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/gF/MD5E-s332052--e6ded5ecfb4dac396ed5d3fd12d5330e.xml/MD5E-s332052--e6ded5ecfb4dac396ed5d3fd12d5330e.xml

KKI/sub-0050803/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050803/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kJ/Jp/MD5E-s195937--0ad43ec976fd011247e60b838be7617c.nii.gz/MD5E-s195937--0ad43ec976fd011247e60b838be7617c.nii.gz

KKI/sub-0050803/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050803/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/p7/MD5E-s222229--feee4f8bc7c615b31813d7a42d050d79.nii.gz/MD5E-s222229--feee4f8bc7c615b31813d7a42d050d79.nii.gz

KKI/sub-0050803/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050803/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/wK/MD5E-s283460--feef55cf9a560fae6aa043a792b83091.nii.gz/MD5E-s283460--feef55cf9a560fae6aa043a792b83091.nii.gz

KKI/sub-0050803/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050803/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/W7/MD5E-s316246--fdc7ab9f022926dafc56ad2b8c7bfba1.nii.gz/MD5E-s316246--fdc7ab9f022926dafc56ad2b8c7bfba1.nii.gz

KKI/sub-0050803/mri/Tian_Subcortex_S2_7T_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050803/mri/Tian_Subcortex_S2_7T_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vx/m8/MD5E-s27509--c793e203c0e2107e612115369d771966.nii.gz/MD5E-s27509--c793e203c0e2107e612115369d771966.nii.gz

KKI/sub-0050803/mri/aal3_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050803/mri/aal3_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wv/wj/MD5E-s220204--ecd743e134d6e1e47554b47cc2778afe.nii.gz/MD5E-s220204--ecd743e134d6e1e47554b47cc2778afe.nii.gz

KKI/sub-0050803/mri/anatomy3_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050803/mri/anatomy3_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/19/7k/MD5E-s160050--20f23a95d32e03cdb45a5035b324f765.nii.gz/MD5E-s160050--20f23a95d32e03cdb45a5035b324f765.nii.gz

KKI/sub-0050803/mri/anon_misub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/Z2/MD5E-s4571966--5c459fa6b172ebf3448368686d0f3ced.nii.gz/MD5E-s4571966--5c459fa6b172ebf3448368686d0f3ced.nii.gz

KKI/sub-0050803/mri/anon_msub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FP/03/MD5E-s12622635--27a51dcd3d24be4eada6cf8eb0bf7a89.nii.gz/MD5E-s12622635--27a51dcd3d24be4eada6cf8eb0bf7a89.nii.gz

KKI/sub-0050803/mri/cat_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jf/gJ/MD5E-s117899--b9795c71acdedf9c2d3f262a87eca0ef.nii.gz/MD5E-s117899--b9795c71acdedf9c2d3f262a87eca0ef.nii.gz

KKI/sub-0050803/mri/cobra_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050803/mri/cobra_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/F7/MD5E-s54269--6954a08579fcb77e9f5a081a37ed9e2e.nii.gz/MD5E-s54269--6954a08579fcb77e9f5a081a37ed9e2e.nii.gz

KKI/sub-0050803/mri/hammers_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050803/mri/hammers_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Z/8V/MD5E-s170807--d3f2f007445b4ed9220a043ab8fc5a1b.nii.gz/MD5E-s170807--d3f2f007445b4ed9220a043ab8fc5a1b.nii.gz

KKI/sub-0050803/mri/ibsr_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050803/mri/ibsr_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w8/6z/MD5E-s176001--f00ae28b1796e59727e2d2c4b959c3cf.nii.gz/MD5E-s176001--f00ae28b1796e59727e2d2c4b959c3cf.nii.gz

KKI/sub-0050803/mri/it_sub-0050803_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/gP/MD5E-s282--a029e84640b7fd16c1fe7427395380ca.mat/MD5E-s282--a029e84640b7fd16c1fe7427395380ca.mat

KKI/sub-0050803/mri/it_sub-0050803_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/2p/MD5E-s283--06a01351e61f50c647ca0f499b8ada59.mat/MD5E-s283--06a01351e61f50c647ca0f499b8ada59.mat

KKI/sub-0050803/mri/iy_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wv/KF/MD5E-s48269101--3fa36cec9033425b817b36b77c3c211f.nii.gz/MD5E-s48269101--3fa36cec9033425b817b36b77c3c211f.nii.gz

KKI/sub-0050803/mri/julichbrain_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050803/mri/julichbrain_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/18/Z0/MD5E-s235006--1473f83294b3a4f9009f9ded413b3f5f.nii.gz/MD5E-s235006--1473f83294b3a4f9009f9ded413b3f5f.nii.gz

KKI/sub-0050803/mri/lpba40_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050803/mri/lpba40_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2x/g8/MD5E-s169006--62e2eda3caa261828dea9b9b2b3acfab.nii.gz/MD5E-s169006--62e2eda3caa261828dea9b9b2b3acfab.nii.gz

KKI/sub-0050803/mri/m0wp1sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/Gq/MD5E-s2601243--bbe4a862e5b4911c5eedcefb0475cf6e.nii.gz/MD5E-s2601243--bbe4a862e5b4911c5eedcefb0475cf6e.nii.gz

KKI/sub-0050803/mri/m0wp2sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/8w/MD5E-s2292636--2f446c4007bbedd9a0ca996102a69a0d.nii.gz/MD5E-s2292636--2f446c4007bbedd9a0ca996102a69a0d.nii.gz

KKI/sub-0050803/mri/m0wp3sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xx/44/MD5E-s2553981--d590459c05ad284d0d36ba7a7ac314b2.nii.gz/MD5E-s2553981--d590459c05ad284d0d36ba7a7ac314b2.nii.gz

KKI/sub-0050803/mri/mori_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

KKI/sub-0050803/mri/mori_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zk/fv/MD5E-s197764--5fbc3ade4ab98fbec550a0e0a53615c3.nii.gz/MD5E-s197764--5fbc3ade4ab98fbec550a0e0a53615c3.nii.gz

KKI/sub-0050803/mri/mwp1sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6J/QG/MD5E-s2604446--ca7ea7ffb54ec1477dffd8b22fc03dad.nii.gz/MD5E-s2604446--ca7ea7ffb54ec1477dffd8b22fc03dad.nii.gz

KKI/sub-0050803/mri/mwp2sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/6j/MD5E-s2297670--9ada04cb188e1fc4ec0280cc49ff5ff1.nii.gz/MD5E-s2297670--9ada04cb188e1fc4ec0280cc49ff5ff1.nii.gz

KKI/sub-0050803/mri/mwp3sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wg/6p/MD5E-s2553574--bf81b99df036bbf2abe25c0f37ab21b8.nii.gz/MD5E-s2553574--bf81b99df036bbf2abe25c0f37ab21b8.nii.gz

KKI/sub-0050803/mri/neuromorphometrics_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050803/mri/neuromorphometrics_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/xJ/MD5E-s230762--7a6c9ee03ac6f5ff1ab7beefe8055ff7.nii.gz/MD5E-s230762--7a6c9ee03ac6f5ff1ab7beefe8055ff7.nii.gz

KKI/sub-0050803/mri/p0sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/kq/MD5E-s697340--f0cf92bed1d4208234bc2b5ddfaa1f9d.nii.gz/MD5E-s697340--f0cf92bed1d4208234bc2b5ddfaa1f9d.nii.gz

KKI/sub-0050803/mri/p1sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/jF/MD5E-s744966--e0b73dc12f0f54f136335449652163a8.nii.gz/MD5E-s744966--e0b73dc12f0f54f136335449652163a8.nii.gz

KKI/sub-0050803/mri/p2sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JP/Qw/MD5E-s482761--df911d1fa441d22f7282083de2be14c9.nii.gz/MD5E-s482761--df911d1fa441d22f7282083de2be14c9.nii.gz

KKI/sub-0050803/mri/p3sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/6z/MD5E-s416074--3c2b4a12a406f679d1123a65811ba6ef.nii.gz/MD5E-s416074--3c2b4a12a406f679d1123a65811ba6ef.nii.gz

KKI/sub-0050803/mri/rp1sub-0050803_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/Ff/MD5E-s460844--20360cf953110c51dbef18c23c840b8c.nii.gz/MD5E-s460844--20360cf953110c51dbef18c23c840b8c.nii.gz

KKI/sub-0050803/mri/rp2sub-0050803_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kf/X6/MD5E-s307523--9d876144e3866d821db35bb334d64967.nii.gz/MD5E-s307523--9d876144e3866d821db35bb334d64967.nii.gz

KKI/sub-0050803/mri/rp3sub-0050803_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X8/9x/MD5E-s289895--aa564427bc87c07f411770553ee42828.nii.gz/MD5E-s289895--aa564427bc87c07f411770553ee42828.nii.gz

KKI/sub-0050803/mri/t_sub-0050803_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/32/fm/MD5E-s284--ce8aa5833567fce017d6b51bb5807f75.mat/MD5E-s284--ce8aa5833567fce017d6b51bb5807f75.mat

KKI/sub-0050803/mri/t_sub-0050803_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/V1/XG/MD5E-s284--a61607164e2b0c22dc59d26f7519d38d.mat/MD5E-s284--a61607164e2b0c22dc59d26f7519d38d.mat

KKI/sub-0050803/mri/thalamus_sub-0050803_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

KKI/sub-0050803/mri/thalamus_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K0/v7/MD5E-s18203--783b3993d885d6fd468f136a6ce47d6d.nii.gz/MD5E-s18203--783b3993d885d6fd468f136a6ce47d6d.nii.gz

KKI/sub-0050803/mri/wj_sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050803/mri/wmisub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8q/qX/MD5E-s1214223--8fe6b9d87e2dcf6242370636989b2b30.nii.gz/MD5E-s1214223--8fe6b9d87e2dcf6242370636989b2b30.nii.gz

KKI/sub-0050803/mri/wmsub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050803/mri/wp0sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zg/w0/MD5E-s519514--d11ea884c18503ee0166ad5664766810.nii.gz/MD5E-s519514--d11ea884c18503ee0166ad5664766810.nii.gz

KKI/sub-0050803/mri/wp1sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050803/mri/wp2sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/w7/MD5E-s442173--98c5d7b609c55a4b19443cc6809e8f02.nii.gz/MD5E-s442173--98c5d7b609c55a4b19443cc6809e8f02.nii.gz

KKI/sub-0050803/mri/wp3sub-0050803_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/Z2/MD5E-s416750--06e4d8bf1edeef9b6b15c458d9564b93.nii.gz/MD5E-s416750--06e4d8bf1edeef9b6b15c458d9564b93.nii.gz

KKI/sub-0050803/mri/y_sub-0050803_T1w.nii.gz

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