[DATALAD RUNCMD] Compute UM_1/sub-0050336

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050336/anat/sub-0050336_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050336"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050336/label/catROI_sub-0050336_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ff/fX/MD5E-s61322--c44e0883cdeaba513b34e625d49d6fd8.mat/MD5E-s61322--c44e0883cdeaba513b34e625d49d6fd8.mat

UM_1/sub-0050336/label/catROI_sub-0050336_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/8g/MD5E-s189173--0cdce1bf7e728ee005baaa31f2a7b2ad.xml/MD5E-s189173--0cdce1bf7e728ee005baaa31f2a7b2ad.xml

UM_1/sub-0050336/label/catROIs_sub-0050336_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vk/p5/MD5E-s120090--c5594bacc15a025dd211f2ecb7a47951.mat/MD5E-s120090--c5594bacc15a025dd211f2ecb7a47951.mat

UM_1/sub-0050336/label/catROIs_sub-0050336_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/Wp/MD5E-s332164--f443f8ce7281a50c5142a51f40749bf0.xml/MD5E-s332164--f443f8ce7281a50c5142a51f40749bf0.xml

UM_1/sub-0050336/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050336/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/jq/MD5E-s121408--c9ab89f6c50cc5673f5bbdd0af0ed718.nii.gz/MD5E-s121408--c9ab89f6c50cc5673f5bbdd0af0ed718.nii.gz

UM_1/sub-0050336/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050336/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mZ/1v/MD5E-s136925--19d1f7209c77f094d3355ca745d4ff13.nii.gz/MD5E-s136925--19d1f7209c77f094d3355ca745d4ff13.nii.gz

UM_1/sub-0050336/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050336/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M9/3V/MD5E-s172323--cd114e6dbb49158cc23bfc3d5577040f.nii.gz/MD5E-s172323--cd114e6dbb49158cc23bfc3d5577040f.nii.gz

UM_1/sub-0050336/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050336/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/8f/MD5E-s191279--28390025788491ceede7c62cae10dd82.nii.gz/MD5E-s191279--28390025788491ceede7c62cae10dd82.nii.gz

UM_1/sub-0050336/mri/Tian_Subcortex_S2_7T_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050336/mri/Tian_Subcortex_S2_7T_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/mF/MD5E-s15621--28db4aaa84f192d496950b60ccad7933.nii.gz/MD5E-s15621--28db4aaa84f192d496950b60ccad7933.nii.gz

UM_1/sub-0050336/mri/aal3_sub-0050336_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050336/mri/aal3_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/anatomy3_sub-0050336_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050336/mri/anatomy3_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G7/vv/MD5E-s98259--c35b1fc160713b7dd9da500feeb3871c.nii.gz/MD5E-s98259--c35b1fc160713b7dd9da500feeb3871c.nii.gz

UM_1/sub-0050336/mri/anon_misub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050336/mri/anon_msub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/vz/MD5E-s7197626--7122b090ff7ae306e663775f19ce9d9c.nii.gz/MD5E-s7197626--7122b090ff7ae306e663775f19ce9d9c.nii.gz

UM_1/sub-0050336/mri/cat_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ff/j7/MD5E-s69263--81253d500243acbe33a6f6fd0b391123.nii.gz/MD5E-s69263--81253d500243acbe33a6f6fd0b391123.nii.gz

UM_1/sub-0050336/mri/cobra_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050336/mri/cobra_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gf/Pw/MD5E-s31856--f9a802f9015f691fd2c0595d709c9720.nii.gz/MD5E-s31856--f9a802f9015f691fd2c0595d709c9720.nii.gz

UM_1/sub-0050336/mri/hammers_sub-0050336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050336/mri/hammers_sub-0050336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/48/3M/MD5E-s105052--b3c02dd72b47be7890fc4c35cac32b04.nii.gz/MD5E-s105052--b3c02dd72b47be7890fc4c35cac32b04.nii.gz

UM_1/sub-0050336/mri/ibsr_sub-0050336_T1w.csv

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UM_1/sub-0050336/mri/ibsr_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/it_sub-0050336_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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UM_1/sub-0050336/mri/it_sub-0050336_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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UM_1/sub-0050336/mri/iy_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/julichbrain_sub-0050336_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050336/mri/julichbrain_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/lpba40_sub-0050336_T1w.csv

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UM_1/sub-0050336/mri/lpba40_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/m0wp1sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/m0wp2sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/m0wp3sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/mori_sub-0050336_T1w.csv

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UM_1/sub-0050336/mri/mori_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/mwp1sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/mwp2sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/mwp3sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/neuromorphometrics_sub-0050336_T1w.csv

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UM_1/sub-0050336/mri/neuromorphometrics_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/p0sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/p1sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/p2sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/p3sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/rp1sub-0050336_T1w_affine.nii.gz

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UM_1/sub-0050336/mri/rp2sub-0050336_T1w_affine.nii.gz

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UM_1/sub-0050336/mri/rp3sub-0050336_T1w_affine.nii.gz

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UM_1/sub-0050336/mri/t_sub-0050336_T1w_affine_reorient.mat

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UM_1/sub-0050336/mri/t_sub-0050336_T1w_rigid_reorient.mat

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UM_1/sub-0050336/mri/thalamus_sub-0050336_T1w.csv

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UM_1/sub-0050336/mri/thalamus_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wj_sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wmisub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wmsub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wp0sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wp1sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wp2sub-0050336_T1w.nii.gz

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UM_1/sub-0050336/mri/wp3sub-0050336_T1w.nii.gz

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