[DATALAD RUNCMD] Compute CMU_a/sub-0050646

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050646/anat/sub-0050646_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050646"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050646/label/catROI_sub-0050646_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/0f/MD5E-s58234--219042353cf4d170d459e9fcb356d4d3.mat/MD5E-s58234--219042353cf4d170d459e9fcb356d4d3.mat

CMU_a/sub-0050646/label/catROI_sub-0050646_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9g/03/MD5E-s188588--c61957899c895712f303ef800888db2a.xml/MD5E-s188588--c61957899c895712f303ef800888db2a.xml

CMU_a/sub-0050646/label/catROIs_sub-0050646_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WV/k1/MD5E-s120103--09d726b7455d13499ee7976d943b7b27.mat/MD5E-s120103--09d726b7455d13499ee7976d943b7b27.mat

CMU_a/sub-0050646/label/catROIs_sub-0050646_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8j/Vk/MD5E-s332131--f968e0a198204618f25f9a9005683ebe.xml/MD5E-s332131--f968e0a198204618f25f9a9005683ebe.xml

CMU_a/sub-0050646/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050646/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pg/pf/MD5E-s180219--fd38dd95ba3384849c6197bd2c176821.nii.gz/MD5E-s180219--fd38dd95ba3384849c6197bd2c176821.nii.gz

CMU_a/sub-0050646/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050646/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kp/90/MD5E-s202513--77fea5150c6035adbbcfd41c6fbed89a.nii.gz/MD5E-s202513--77fea5150c6035adbbcfd41c6fbed89a.nii.gz

CMU_a/sub-0050646/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050646/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FV/1v/MD5E-s270554--3dcb38102167a995b3e5942cf2a26397.nii.gz/MD5E-s270554--3dcb38102167a995b3e5942cf2a26397.nii.gz

CMU_a/sub-0050646/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050646/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jv/5Q/MD5E-s300600--a571e8ca72aa28f07d102f5a6b8471e6.nii.gz/MD5E-s300600--a571e8ca72aa28f07d102f5a6b8471e6.nii.gz

CMU_a/sub-0050646/mri/Tian_Subcortex_S2_7T_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050646/mri/Tian_Subcortex_S2_7T_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/V9/MD5E-s22952--baadf17529d7507f3da05598206b68c6.nii.gz/MD5E-s22952--baadf17529d7507f3da05598206b68c6.nii.gz

CMU_a/sub-0050646/mri/aal3_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050646/mri/aal3_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vm/VF/MD5E-s208068--183e01e8cbf586ad049c7794828fbe3d.nii.gz/MD5E-s208068--183e01e8cbf586ad049c7794828fbe3d.nii.gz

CMU_a/sub-0050646/mri/anatomy3_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050646/mri/anatomy3_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g8/jV/MD5E-s148217--0c4e9f80b77abbc1e959a3d61ab6619b.nii.gz/MD5E-s148217--0c4e9f80b77abbc1e959a3d61ab6619b.nii.gz

CMU_a/sub-0050646/mri/anon_misub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/9V/MD5E-s8399256--d537852fa79f87b62e7022e95d3ec5b6.nii.gz/MD5E-s8399256--d537852fa79f87b62e7022e95d3ec5b6.nii.gz

CMU_a/sub-0050646/mri/anon_msub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/k9/MD5E-s8248052--103eabcda413f1559fd6f22b47408595.nii.gz/MD5E-s8248052--103eabcda413f1559fd6f22b47408595.nii.gz

CMU_a/sub-0050646/mri/cat_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1z/PX/MD5E-s112297--a2656e3f35d0a5a2fa8cad6c0b45b664.nii.gz/MD5E-s112297--a2656e3f35d0a5a2fa8cad6c0b45b664.nii.gz

CMU_a/sub-0050646/mri/cobra_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050646/mri/cobra_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mk/wf/MD5E-s51101--2b3f6ea460e1d64fc66ac4046e65511a.nii.gz/MD5E-s51101--2b3f6ea460e1d64fc66ac4046e65511a.nii.gz

CMU_a/sub-0050646/mri/hammers_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050646/mri/hammers_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gv/9W/MD5E-s161722--47be491438a52e7f3a9159899e8175bd.nii.gz/MD5E-s161722--47be491438a52e7f3a9159899e8175bd.nii.gz

CMU_a/sub-0050646/mri/ibsr_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050646/mri/ibsr_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/Kp/MD5E-s170590--35f1e99bd7bdfc7c64f82e428f903571.nii.gz/MD5E-s170590--35f1e99bd7bdfc7c64f82e428f903571.nii.gz

CMU_a/sub-0050646/mri/it_sub-0050646_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kv/V3/MD5E-s283--3613bf7141493ccac06b44fd55bed7c1.mat/MD5E-s283--3613bf7141493ccac06b44fd55bed7c1.mat

CMU_a/sub-0050646/mri/it_sub-0050646_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/3p/MD5E-s283--b140c87925060490f381e1f05e15af05.mat/MD5E-s283--b140c87925060490f381e1f05e15af05.mat

CMU_a/sub-0050646/mri/iy_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/71/50/MD5E-s50168239--f20269ef91bf9f0f10ed820ece7c82d9.nii.gz/MD5E-s50168239--f20269ef91bf9f0f10ed820ece7c82d9.nii.gz

CMU_a/sub-0050646/mri/julichbrain_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050646/mri/julichbrain_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W9/KW/MD5E-s218262--1cc1fef3935757e016d6c6717e2c9e38.nii.gz/MD5E-s218262--1cc1fef3935757e016d6c6717e2c9e38.nii.gz

CMU_a/sub-0050646/mri/lpba40_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050646/mri/lpba40_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0q/17/MD5E-s157538--654a0d0242805ecbf53d199746f508b3.nii.gz/MD5E-s157538--654a0d0242805ecbf53d199746f508b3.nii.gz

CMU_a/sub-0050646/mri/m0wp1sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pw/2P/MD5E-s2595227--9abd14f3b81cb227b29fd078cd033c24.nii.gz/MD5E-s2595227--9abd14f3b81cb227b29fd078cd033c24.nii.gz

CMU_a/sub-0050646/mri/m0wp2sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z3/f1/MD5E-s2351385--d04694a47c96c4b07df1561b6b6be9aa.nii.gz/MD5E-s2351385--d04694a47c96c4b07df1561b6b6be9aa.nii.gz

CMU_a/sub-0050646/mri/m0wp3sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/Pz/MD5E-s2572940--20615d4aa8a8107dd3b4a2c92c295532.nii.gz/MD5E-s2572940--20615d4aa8a8107dd3b4a2c92c295532.nii.gz

CMU_a/sub-0050646/mri/mori_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_a/sub-0050646/mri/mori_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/Km/MD5E-s191544--1bc41e7a8141f58a582d4bea3da19362.nii.gz/MD5E-s191544--1bc41e7a8141f58a582d4bea3da19362.nii.gz

CMU_a/sub-0050646/mri/mwp1sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jf/pj/MD5E-s2594375--d7549aad3d50f42d5349ce432e008283.nii.gz/MD5E-s2594375--d7549aad3d50f42d5349ce432e008283.nii.gz

CMU_a/sub-0050646/mri/mwp2sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/09/MD5E-s2347854--289afc8419efd74a1de6ba6ec36a82ae.nii.gz/MD5E-s2347854--289afc8419efd74a1de6ba6ec36a82ae.nii.gz

CMU_a/sub-0050646/mri/mwp3sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/gJ/MD5E-s2569665--51d97cb98b5f704850c4c5e2b50afd0f.nii.gz/MD5E-s2569665--51d97cb98b5f704850c4c5e2b50afd0f.nii.gz

CMU_a/sub-0050646/mri/neuromorphometrics_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050646/mri/neuromorphometrics_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/K6/MD5E-s219978--f5d6439664d97f56ea99c84ecde414b2.nii.gz/MD5E-s219978--f5d6439664d97f56ea99c84ecde414b2.nii.gz

CMU_a/sub-0050646/mri/p0sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m9/09/MD5E-s749312--8c432bab460ab9e86b4a71955d283144.nii.gz/MD5E-s749312--8c432bab460ab9e86b4a71955d283144.nii.gz

CMU_a/sub-0050646/mri/p1sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j3/9g/MD5E-s799231--0405e8abc5a5ea4a4881f2af12d7b1ae.nii.gz/MD5E-s799231--0405e8abc5a5ea4a4881f2af12d7b1ae.nii.gz

CMU_a/sub-0050646/mri/p2sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/1v/MD5E-s524647--dd03e4d1b5d242fae39c1a24245b4318.nii.gz/MD5E-s524647--dd03e4d1b5d242fae39c1a24245b4318.nii.gz

CMU_a/sub-0050646/mri/p3sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zX/26/MD5E-s445531--482c997a081145e6b0c677e92ee30b19.nii.gz/MD5E-s445531--482c997a081145e6b0c677e92ee30b19.nii.gz

CMU_a/sub-0050646/mri/rp1sub-0050646_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mQ/9V/MD5E-s463159--89420ccce5ac295996a9d15855b4b58b.nii.gz/MD5E-s463159--89420ccce5ac295996a9d15855b4b58b.nii.gz

CMU_a/sub-0050646/mri/rp2sub-0050646_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0z/6Q/MD5E-s319321--953efbd2ce773f1591a7cdc442f8d14c.nii.gz/MD5E-s319321--953efbd2ce773f1591a7cdc442f8d14c.nii.gz

CMU_a/sub-0050646/mri/rp3sub-0050646_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5V/vm/MD5E-s299589--321b3dcc6c074ec1cf13276d747a6f63.nii.gz/MD5E-s299589--321b3dcc6c074ec1cf13276d747a6f63.nii.gz

CMU_a/sub-0050646/mri/t_sub-0050646_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PK/Vw/MD5E-s285--fc71a086e1e63289f28e60bb875eef30.mat/MD5E-s285--fc71a086e1e63289f28e60bb875eef30.mat

CMU_a/sub-0050646/mri/t_sub-0050646_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/fJ/MD5E-s282--f6d46d5654dff61eee250ff880c71856.mat/MD5E-s282--f6d46d5654dff61eee250ff880c71856.mat

CMU_a/sub-0050646/mri/thalamus_sub-0050646_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

CMU_a/sub-0050646/mri/thalamus_sub-0050646_T1w.nii.gz

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CMU_a/sub-0050646/mri/wj_sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vw/7K/MD5E-s5354635--eb86d564626340eeb6e6ace6478fdd3a.nii.gz/MD5E-s5354635--eb86d564626340eeb6e6ace6478fdd3a.nii.gz

CMU_a/sub-0050646/mri/wmisub-0050646_T1w.nii.gz

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CMU_a/sub-0050646/mri/wmsub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050646/mri/wp0sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050646/mri/wp1sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kv/WF/MD5E-s581137--5396b254f4059202220de875052f7406.nii.gz/MD5E-s581137--5396b254f4059202220de875052f7406.nii.gz

CMU_a/sub-0050646/mri/wp2sub-0050646_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050646/mri/wp3sub-0050646_T1w.nii.gz

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