[DATALAD RUNCMD] Compute Trinity/sub-0050247

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050247/anat/sub-0050247_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050247"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050247/label/catROI_sub-0050247_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/35/MD5E-s61346--05bedff1f9e965ace77ec69aef4acafb.mat/MD5E-s61346--05bedff1f9e965ace77ec69aef4acafb.mat

Trinity/sub-0050247/label/catROI_sub-0050247_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/wz/MD5E-s188736--68b31ce340029d8088d039630f029099.xml/MD5E-s188736--68b31ce340029d8088d039630f029099.xml

Trinity/sub-0050247/label/catROIs_sub-0050247_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k0/0x/MD5E-s120045--16f683b2aa1e098678275b3d556265d8.mat/MD5E-s120045--16f683b2aa1e098678275b3d556265d8.mat

Trinity/sub-0050247/label/catROIs_sub-0050247_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/53/qx/MD5E-s332112--3dcd9d962286c7bfdb88080b5cf34a33.xml/MD5E-s332112--3dcd9d962286c7bfdb88080b5cf34a33.xml

Trinity/sub-0050247/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050247_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050247/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8x/k5/MD5E-s170506--71e31880bb754bf3cd68283bc6b4280a.nii.gz/MD5E-s170506--71e31880bb754bf3cd68283bc6b4280a.nii.gz

Trinity/sub-0050247/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050247_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050247_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050247/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x8/jW/MD5E-s258740--02f599f39160ba99ae01cdf2fbd720d4.nii.gz/MD5E-s258740--02f599f39160ba99ae01cdf2fbd720d4.nii.gz

Trinity/sub-0050247/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050247_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w7/mk/MD5E-s287752--8519c8a03baa8df52a928ccb6329f127.nii.gz/MD5E-s287752--8519c8a03baa8df52a928ccb6329f127.nii.gz

Trinity/sub-0050247/mri/Tian_Subcortex_S2_7T_sub-0050247_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/Tian_Subcortex_S2_7T_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/QM/MD5E-s23007--56bb49eb55f06366360d766946ec2386.nii.gz/MD5E-s23007--56bb49eb55f06366360d766946ec2386.nii.gz

Trinity/sub-0050247/mri/aal3_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/aal3_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/anatomy3_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/anatomy3_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/anon_misub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050247/mri/anon_msub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g0/m4/MD5E-s7982158--33b2ed7e08f911453cd64f0be5d95aab.nii.gz/MD5E-s7982158--33b2ed7e08f911453cd64f0be5d95aab.nii.gz

Trinity/sub-0050247/mri/cat_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/6f/MD5E-s98366--e3506fa7cfed21522d072463dc9635c9.nii.gz/MD5E-s98366--e3506fa7cfed21522d072463dc9635c9.nii.gz

Trinity/sub-0050247/mri/cobra_sub-0050247_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050247/mri/cobra_sub-0050247_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/68/Px/MD5E-s46261--adf37c9dd4d2b7f155583c1dfacfa24e.nii.gz/MD5E-s46261--adf37c9dd4d2b7f155583c1dfacfa24e.nii.gz

Trinity/sub-0050247/mri/hammers_sub-0050247_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050247/mri/hammers_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/ibsr_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/ibsr_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/it_sub-0050247_T1w_affine_reorient.mat

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Trinity/sub-0050247/mri/it_sub-0050247_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gf/Jm/MD5E-s284--32678e34e7cf914f4b59aa24189b6c40.mat/MD5E-s284--32678e34e7cf914f4b59aa24189b6c40.mat

Trinity/sub-0050247/mri/iy_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/julichbrain_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/julichbrain_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/lpba40_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/lpba40_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/m0wp1sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/m0wp2sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/m0wp3sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/mori_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/mori_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/mwp1sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/mwp2sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/mwp3sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/neuromorphometrics_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/neuromorphometrics_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/p0sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/p1sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/p2sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/p3sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/rp1sub-0050247_T1w_affine.nii.gz

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Trinity/sub-0050247/mri/rp2sub-0050247_T1w_affine.nii.gz

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Trinity/sub-0050247/mri/rp3sub-0050247_T1w_affine.nii.gz

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Trinity/sub-0050247/mri/t_sub-0050247_T1w_affine_reorient.mat

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Trinity/sub-0050247/mri/t_sub-0050247_T1w_rigid_reorient.mat

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Trinity/sub-0050247/mri/thalamus_sub-0050247_T1w.csv

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Trinity/sub-0050247/mri/thalamus_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wj_sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wmisub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wmsub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wp0sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wp1sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wp2sub-0050247_T1w.nii.gz

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Trinity/sub-0050247/mri/wp3sub-0050247_T1w.nii.gz

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