[DATALAD RUNCMD] Compute Leuven_2/sub-0050743

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050743/anat/sub-0050743_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050743"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050743/label/catROI_sub-0050743_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/48/Vg/MD5E-s61278--d06da7ac266e13be192435aefac67501.mat/MD5E-s61278--d06da7ac266e13be192435aefac67501.mat

Leuven_2/sub-0050743/label/catROI_sub-0050743_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fx/ZM/MD5E-s188950--7aff2b3729ed2740da678cc1db97f9ba.xml/MD5E-s188950--7aff2b3729ed2740da678cc1db97f9ba.xml

Leuven_2/sub-0050743/label/catROIs_sub-0050743_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XQ/gj/MD5E-s120077--abb6dd0a989deadd49f5c43cd089454e.mat/MD5E-s120077--abb6dd0a989deadd49f5c43cd089454e.mat

Leuven_2/sub-0050743/label/catROIs_sub-0050743_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fq/W6/MD5E-s332119--5f67b6d9cffccff20e84bd6e75892b4a.xml/MD5E-s332119--5f67b6d9cffccff20e84bd6e75892b4a.xml

Leuven_2/sub-0050743/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050743/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KZ/65/MD5E-s167380--05987d90bf591a33113979abc9da3922.nii.gz/MD5E-s167380--05987d90bf591a33113979abc9da3922.nii.gz

Leuven_2/sub-0050743/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050743/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q8/ZZ/MD5E-s186728--24dfa7daf3dfad8af4a6a5f990fb7a70.nii.gz/MD5E-s186728--24dfa7daf3dfad8af4a6a5f990fb7a70.nii.gz

Leuven_2/sub-0050743/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050743/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/pQ/MD5E-s238261--3854534fcf2851aab6dd719155e3b9d9.nii.gz/MD5E-s238261--3854534fcf2851aab6dd719155e3b9d9.nii.gz

Leuven_2/sub-0050743/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050743/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g0/Q0/MD5E-s265235--9883e59dedacfb02486034c6b1637b9e.nii.gz/MD5E-s265235--9883e59dedacfb02486034c6b1637b9e.nii.gz

Leuven_2/sub-0050743/mri/Tian_Subcortex_S2_7T_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050743/mri/Tian_Subcortex_S2_7T_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mM/Mg/MD5E-s25302--1b407ff8ab8b36d6c46676b2641e8b5d.nii.gz/MD5E-s25302--1b407ff8ab8b36d6c46676b2641e8b5d.nii.gz

Leuven_2/sub-0050743/mri/aal3_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050743/mri/aal3_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/anatomy3_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050743/mri/anatomy3_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V6/MX/MD5E-s133882--6b0c6469ce5a60d556be50a2b26e9cec.nii.gz/MD5E-s133882--6b0c6469ce5a60d556be50a2b26e9cec.nii.gz

Leuven_2/sub-0050743/mri/anon_misub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/6m/MD5E-s4734256--f094cd9dee6e9abedb3695cb9b462497.nii.gz/MD5E-s4734256--f094cd9dee6e9abedb3695cb9b462497.nii.gz

Leuven_2/sub-0050743/mri/anon_msub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kQ/zJ/MD5E-s11688809--c7822125222e2ef0fb29c32dde3e17e9.nii.gz/MD5E-s11688809--c7822125222e2ef0fb29c32dde3e17e9.nii.gz

Leuven_2/sub-0050743/mri/cat_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/XG/MD5E-s98863--b7ff7dffb16cb3c9ceb00f857a9c50fe.nii.gz/MD5E-s98863--b7ff7dffb16cb3c9ceb00f857a9c50fe.nii.gz

Leuven_2/sub-0050743/mri/cobra_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050743/mri/cobra_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q6/J7/MD5E-s47633--6c163bf69d4a22aac51820f7b4117850.nii.gz/MD5E-s47633--6c163bf69d4a22aac51820f7b4117850.nii.gz

Leuven_2/sub-0050743/mri/hammers_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050743/mri/hammers_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/VX/MD5E-s147221--c05928c37aceb49d8cff44e50df839af.nii.gz/MD5E-s147221--c05928c37aceb49d8cff44e50df839af.nii.gz

Leuven_2/sub-0050743/mri/ibsr_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050743/mri/ibsr_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/x2/MD5E-s151460--a23777d98b68fd49764b0aec28fc0d44.nii.gz/MD5E-s151460--a23777d98b68fd49764b0aec28fc0d44.nii.gz

Leuven_2/sub-0050743/mri/it_sub-0050743_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QG/1g/MD5E-s283--27a650f43b7fb29759a556347dda688a.mat/MD5E-s283--27a650f43b7fb29759a556347dda688a.mat

Leuven_2/sub-0050743/mri/it_sub-0050743_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kW/79/MD5E-s283--4e2094a1b3b10df9c6edd7e2f4e9cb5c.mat/MD5E-s283--4e2094a1b3b10df9c6edd7e2f4e9cb5c.mat

Leuven_2/sub-0050743/mri/iy_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z1/49/MD5E-s39220571--d8984b42aaafde91cf91e2b0cad63db6.nii.gz/MD5E-s39220571--d8984b42aaafde91cf91e2b0cad63db6.nii.gz

Leuven_2/sub-0050743/mri/julichbrain_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050743/mri/julichbrain_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VV/jJ/MD5E-s197778--ed095d0e877cb2a9833de209910e4555.nii.gz/MD5E-s197778--ed095d0e877cb2a9833de209910e4555.nii.gz

Leuven_2/sub-0050743/mri/lpba40_sub-0050743_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_2/sub-0050743/mri/lpba40_sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/m0wp1sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/m0wp2sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/Fj/MD5E-s2260313--51cc6aa9d2187875f80f66408d15f84f.nii.gz/MD5E-s2260313--51cc6aa9d2187875f80f66408d15f84f.nii.gz

Leuven_2/sub-0050743/mri/m0wp3sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/mori_sub-0050743_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/mori_sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/mwp1sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/pm/MD5E-s2618109--77aef72561daca618251214c32c1a3ca.nii.gz/MD5E-s2618109--77aef72561daca618251214c32c1a3ca.nii.gz

Leuven_2/sub-0050743/mri/mwp2sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zK/9G/MD5E-s2261996--4650dc1f32e368a663cc1c6564d4a010.nii.gz/MD5E-s2261996--4650dc1f32e368a663cc1c6564d4a010.nii.gz

Leuven_2/sub-0050743/mri/mwp3sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/neuromorphometrics_sub-0050743_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/neuromorphometrics_sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/p0sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/p1sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/p2sub-0050743_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050743/mri/p3sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/rp1sub-0050743_T1w_affine.nii.gz

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Leuven_2/sub-0050743/mri/rp2sub-0050743_T1w_affine.nii.gz

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Leuven_2/sub-0050743/mri/rp3sub-0050743_T1w_affine.nii.gz

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Leuven_2/sub-0050743/mri/t_sub-0050743_T1w_affine_reorient.mat

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Leuven_2/sub-0050743/mri/t_sub-0050743_T1w_rigid_reorient.mat

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Leuven_2/sub-0050743/mri/thalamus_sub-0050743_T1w.csv

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Leuven_2/sub-0050743/mri/thalamus_sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/wj_sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/wmisub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/wmsub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/wp0sub-0050743_T1w.nii.gz

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Leuven_2/sub-0050743/mri/wp1sub-0050743_T1w.nii.gz

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