[DATALAD RUNCMD] Compute SBL/sub-0051558

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SBL/sub-0051558/anat/sub-0051558_T1w.nii.gz"
 ],
 "outputs": [
  "SBL/sub-0051558"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SBL/sub-0051558/label/catROI_sub-0051558_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/2w/MD5E-s61383--ecfd33629e3e783a0031853f99f023c3.mat/MD5E-s61383--ecfd33629e3e783a0031853f99f023c3.mat

SBL/sub-0051558/label/catROI_sub-0051558_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/KP/V2/MD5E-s189001--62e27196509bb2f1f78ee510104501e0.xml/MD5E-s189001--62e27196509bb2f1f78ee510104501e0.xml

SBL/sub-0051558/label/catROIs_sub-0051558_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zm/xJ/MD5E-s120052--81d45229126b7a5a24a146e13a0ac602.mat/MD5E-s120052--81d45229126b7a5a24a146e13a0ac602.mat

SBL/sub-0051558/label/catROIs_sub-0051558_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/30/MD5E-s332225--9f23cd7c4eff7a2fba088274882ae19e.xml/MD5E-s332225--9f23cd7c4eff7a2fba088274882ae19e.xml

SBL/sub-0051558/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SBL/sub-0051558/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K3/fP/MD5E-s199527--afcd92ed349f75a13512a0c89d56757d.nii.gz/MD5E-s199527--afcd92ed349f75a13512a0c89d56757d.nii.gz

SBL/sub-0051558/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SBL/sub-0051558/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mq/15/MD5E-s222638--e7a963147de5c5b44e168dbc7676284d.nii.gz/MD5E-s222638--e7a963147de5c5b44e168dbc7676284d.nii.gz

SBL/sub-0051558/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SBL/sub-0051558/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K0/JQ/MD5E-s282364--07dd501525baae2a99f66df30fa70e54.nii.gz/MD5E-s282364--07dd501525baae2a99f66df30fa70e54.nii.gz

SBL/sub-0051558/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SBL/sub-0051558/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/GZ/MD5E-s313778--e3171558936c62e22fd4e4dd90ef00f1.nii.gz/MD5E-s313778--e3171558936c62e22fd4e4dd90ef00f1.nii.gz

SBL/sub-0051558/mri/Tian_Subcortex_S2_7T_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SBL/sub-0051558/mri/Tian_Subcortex_S2_7T_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x8/Z5/MD5E-s26605--5ef213c7003c76ee1ebebbb92e29225f.nii.gz/MD5E-s26605--5ef213c7003c76ee1ebebbb92e29225f.nii.gz

SBL/sub-0051558/mri/aal3_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SBL/sub-0051558/mri/aal3_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wv/VQ/MD5E-s219690--284758eca65eacbcd97a34b8bba57d7d.nii.gz/MD5E-s219690--284758eca65eacbcd97a34b8bba57d7d.nii.gz

SBL/sub-0051558/mri/anatomy3_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SBL/sub-0051558/mri/anatomy3_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4W/Kx/MD5E-s157887--f929e19ebe0af665b37e71f13b7e46d0.nii.gz/MD5E-s157887--f929e19ebe0af665b37e71f13b7e46d0.nii.gz

SBL/sub-0051558/mri/anon_misub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J9/X1/MD5E-s4606512--46d68289137caae6295ad6bd2c4dcb4e.nii.gz/MD5E-s4606512--46d68289137caae6295ad6bd2c4dcb4e.nii.gz

SBL/sub-0051558/mri/anon_msub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/FM/MD5E-s10880877--93c6388098c0821512dc4b4a066d4a34.nii.gz/MD5E-s10880877--93c6388098c0821512dc4b4a066d4a34.nii.gz

SBL/sub-0051558/mri/cat_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jk/XM/MD5E-s121949--bac916debc77d4df5a7ad3ec0813429d.nii.gz/MD5E-s121949--bac916debc77d4df5a7ad3ec0813429d.nii.gz

SBL/sub-0051558/mri/cobra_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SBL/sub-0051558/mri/cobra_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2m/pp/MD5E-s51843--4e837266b7b764a158fbac4ad54d8ca4.nii.gz/MD5E-s51843--4e837266b7b764a158fbac4ad54d8ca4.nii.gz

SBL/sub-0051558/mri/hammers_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SBL/sub-0051558/mri/hammers_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Z/27/MD5E-s172948--716ca1a56e88649af467b9f64e218c7b.nii.gz/MD5E-s172948--716ca1a56e88649af467b9f64e218c7b.nii.gz

SBL/sub-0051558/mri/ibsr_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SBL/sub-0051558/mri/ibsr_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/7x/MD5E-s177274--e3b3f4b85a0391dad6e07e7ef5228d72.nii.gz/MD5E-s177274--e3b3f4b85a0391dad6e07e7ef5228d72.nii.gz

SBL/sub-0051558/mri/it_sub-0051558_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2j/pF/MD5E-s283--8f8c747a3425e7b385cd55c7db377fbb.mat/MD5E-s283--8f8c747a3425e7b385cd55c7db377fbb.mat

SBL/sub-0051558/mri/it_sub-0051558_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Q/5X/MD5E-s281--ac132763e1624d3334669da625f9cb7a.mat/MD5E-s281--ac132763e1624d3334669da625f9cb7a.mat

SBL/sub-0051558/mri/iy_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3M/37/MD5E-s46004653--6523feb37aca434174f8d8b31419d456.nii.gz/MD5E-s46004653--6523feb37aca434174f8d8b31419d456.nii.gz

SBL/sub-0051558/mri/julichbrain_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SBL/sub-0051558/mri/julichbrain_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/5G/MD5E-s236742--21caa4d0194688377710d0196db4777e.nii.gz/MD5E-s236742--21caa4d0194688377710d0196db4777e.nii.gz

SBL/sub-0051558/mri/lpba40_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SBL/sub-0051558/mri/lpba40_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vj/Z2/MD5E-s170758--82397ddd3ad167d71b04c6e4fbdb35c3.nii.gz/MD5E-s170758--82397ddd3ad167d71b04c6e4fbdb35c3.nii.gz

SBL/sub-0051558/mri/m0wp1sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gg/8W/MD5E-s2580646--fabe676dbd9f98989a69ae6f4c9e7a9b.nii.gz/MD5E-s2580646--fabe676dbd9f98989a69ae6f4c9e7a9b.nii.gz

SBL/sub-0051558/mri/m0wp2sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/93/MD5E-s2370331--6c892f36e1c7c10c181e50ece63adada.nii.gz/MD5E-s2370331--6c892f36e1c7c10c181e50ece63adada.nii.gz

SBL/sub-0051558/mri/m0wp3sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/Gf/MD5E-s2500221--8f4d92db1f1cf66827073e7b747306d4.nii.gz/MD5E-s2500221--8f4d92db1f1cf66827073e7b747306d4.nii.gz

SBL/sub-0051558/mri/mori_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SBL/sub-0051558/mri/mori_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8k/gf/MD5E-s199813--dbd41df4f1244ce79ad126cc860ee35f.nii.gz/MD5E-s199813--dbd41df4f1244ce79ad126cc860ee35f.nii.gz

SBL/sub-0051558/mri/mwp1sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xk/j8/MD5E-s2582526--b716c4bd632c95484c5f160a3a4e64a1.nii.gz/MD5E-s2582526--b716c4bd632c95484c5f160a3a4e64a1.nii.gz

SBL/sub-0051558/mri/mwp2sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/40/mv/MD5E-s2366554--45989535225a6745205e3d93454b91f8.nii.gz/MD5E-s2366554--45989535225a6745205e3d93454b91f8.nii.gz

SBL/sub-0051558/mri/mwp3sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/53/zV/MD5E-s2498466--38bb869981d117d07dd489a6dc21d1af.nii.gz/MD5E-s2498466--38bb869981d117d07dd489a6dc21d1af.nii.gz

SBL/sub-0051558/mri/neuromorphometrics_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SBL/sub-0051558/mri/neuromorphometrics_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/QJ/MD5E-s229812--59878b329c9e6dc393c1a86111417b98.nii.gz/MD5E-s229812--59878b329c9e6dc393c1a86111417b98.nii.gz

SBL/sub-0051558/mri/p0sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/pV/MD5E-s712885--b5ac80150aa71901cbaedfc6d40fe76d.nii.gz/MD5E-s712885--b5ac80150aa71901cbaedfc6d40fe76d.nii.gz

SBL/sub-0051558/mri/p1sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/kx/MD5E-s764489--976e3bbf1205026242ea26dd67b1be1a.nii.gz/MD5E-s764489--976e3bbf1205026242ea26dd67b1be1a.nii.gz

SBL/sub-0051558/mri/p2sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X0/07/MD5E-s503233--5cc962b9c4ba40050f0595db50e485f2.nii.gz/MD5E-s503233--5cc962b9c4ba40050f0595db50e485f2.nii.gz

SBL/sub-0051558/mri/p3sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k8/kX/MD5E-s424688--082b97aa69c1162f51cf79656dd5a928.nii.gz/MD5E-s424688--082b97aa69c1162f51cf79656dd5a928.nii.gz

SBL/sub-0051558/mri/rp1sub-0051558_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2p/V2/MD5E-s452913--8e3ead206388856349e28b70a285a3a6.nii.gz/MD5E-s452913--8e3ead206388856349e28b70a285a3a6.nii.gz

SBL/sub-0051558/mri/rp2sub-0051558_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m3/45/MD5E-s316389--63f097460059fc7db5b87028ef9295fa.nii.gz/MD5E-s316389--63f097460059fc7db5b87028ef9295fa.nii.gz

SBL/sub-0051558/mri/rp3sub-0051558_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/26/KP/MD5E-s287200--b760c3dea7eac583e694c7892379b48e.nii.gz/MD5E-s287200--b760c3dea7eac583e694c7892379b48e.nii.gz

SBL/sub-0051558/mri/t_sub-0051558_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/67/MD5E-s285--308b500079c81b77d5a2b93c2bf96440.mat/MD5E-s285--308b500079c81b77d5a2b93c2bf96440.mat

SBL/sub-0051558/mri/t_sub-0051558_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0v/05/MD5E-s283--2483775801a524abb1203a75db2848ba.mat/MD5E-s283--2483775801a524abb1203a75db2848ba.mat

SBL/sub-0051558/mri/thalamus_sub-0051558_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SBL/sub-0051558/mri/thalamus_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wj_sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wmisub-0051558_T1w.nii.gz

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SBL/sub-0051558/mri/wmsub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wp0sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wp1sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wp2sub-0051558_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051558/mri/wp3sub-0051558_T1w.nii.gz

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