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[DATALAD RUNCMD] Compute OHSU/sub-0050162

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050162/anat/sub-0050162_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050162"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 6 months ago
parent
8c4b7e5e26
commit
4a16c76447
100 changed files with 99 additions and 0 deletions
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      OHSU/sub-0050162/label/catROI_sub-0050162_T1w.mat
  2. 1 0
      OHSU/sub-0050162/label/catROI_sub-0050162_T1w.xml
  3. 1 0
      OHSU/sub-0050162/label/catROIs_sub-0050162_T1w.mat
  4. 1 0
      OHSU/sub-0050162/label/catROIs_sub-0050162_T1w.xml
  5. 1 0
      OHSU/sub-0050162/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050162_T1w.csv
  6. 1 0
      OHSU/sub-0050162/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050162_T1w.nii.gz
  7. 1 0
      OHSU/sub-0050162/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050162_T1w.csv
  8. 1 0
      OHSU/sub-0050162/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050162_T1w.csv
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      OHSU/sub-0050162/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050162_T1w.csv
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      OHSU/sub-0050162/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/Tian_Subcortex_S2_7T_sub-0050162_T1w.csv
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      OHSU/sub-0050162/mri/Tian_Subcortex_S2_7T_sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/aal3_sub-0050162_T1w.csv
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      OHSU/sub-0050162/mri/neuromorphometrics_sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/p0sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/p1sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/rp1sub-0050162_T1w_affine.nii.gz
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      OHSU/sub-0050162/mri/rp3sub-0050162_T1w_affine.nii.gz
  52. 1 0
      OHSU/sub-0050162/mri/t_sub-0050162_T1w_affine_reorient.mat
  53. 1 0
      OHSU/sub-0050162/mri/t_sub-0050162_T1w_rigid_reorient.mat
  54. 1 0
      OHSU/sub-0050162/mri/thalamus_sub-0050162_T1w.csv
  55. 1 0
      OHSU/sub-0050162/mri/thalamus_sub-0050162_T1w.nii.gz
  56. 1 0
      OHSU/sub-0050162/mri/wj_sub-0050162_T1w.nii.gz
  57. 1 0
      OHSU/sub-0050162/mri/wmisub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/wmsub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/wp0sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/wp1sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/wp2sub-0050162_T1w.nii.gz
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      OHSU/sub-0050162/mri/wp3sub-0050162_T1w.nii.gz
  63. 1 0
      OHSU/sub-0050162/mri/y_sub-0050162_T1w.nii.gz
  64. 1 0
      OHSU/sub-0050162/report/cat_sub-0050162_T1w.mat
  65. 1 0
      OHSU/sub-0050162/report/cat_sub-0050162_T1w.xml
  66. 1 0
      OHSU/sub-0050162/report/catlog_sub-0050162_T1w.nii.txt
  67. 1 0
      OHSU/sub-0050162/report/catreport_sub-0050162_T1w.pdf
  68. 1 0
      OHSU/sub-0050162/report/catreportj_sub-0050162_T1w.jpg
  69. 1 0
      OHSU/sub-0050162/surf/lh.area.sub-0050162_T1w
  70. 1 0
      OHSU/sub-0050162/surf/lh.central.sub-0050162_T1w.gii
  71. 1 0
      OHSU/sub-0050162/surf/lh.depth.sub-0050162_T1w
  72. 1 0
      OHSU/sub-0050162/surf/lh.edgemap32k.sub-0050162_T1w.mat
  73. 1 0
      OHSU/sub-0050162/surf/lh.fractaldimension.sub-0050162_T1w
  74. 1 0
      OHSU/sub-0050162/surf/lh.gmv.sub-0050162_T1w
  75. 1 0
      OHSU/sub-0050162/surf/lh.gyrification.sub-0050162_T1w
  76. 1 0
      OHSU/sub-0050162/surf/lh.pbt.sub-0050162_T1w
  77. 1 0
      OHSU/sub-0050162/surf/lh.sphere.reg.sub-0050162_T1w.gii
  78. 1 0
      OHSU/sub-0050162/surf/lh.sphere.sub-0050162_T1w.gii
  79. 1 0
      OHSU/sub-0050162/surf/lh.thickness.sub-0050162_T1w
  80. 1 0
      OHSU/sub-0050162/surf/lh.toroGI20mm.sub-0050162_T1w
  81. 1 0
      OHSU/sub-0050162/surf/rh.area.sub-0050162_T1w
  82. 1 0
      OHSU/sub-0050162/surf/rh.central.sub-0050162_T1w.gii
  83. 1 0
      OHSU/sub-0050162/surf/rh.depth.sub-0050162_T1w
  84. 1 0
      OHSU/sub-0050162/surf/rh.edgemap32k.sub-0050162_T1w.mat
  85. 1 0
      OHSU/sub-0050162/surf/rh.fractaldimension.sub-0050162_T1w
  86. 1 0
      OHSU/sub-0050162/surf/rh.gmv.sub-0050162_T1w
  87. 1 0
      OHSU/sub-0050162/surf/rh.gyrification.sub-0050162_T1w
  88. 1 0
      OHSU/sub-0050162/surf/rh.pbt.sub-0050162_T1w
  89. 1 0
      OHSU/sub-0050162/surf/rh.sphere.reg.sub-0050162_T1w.gii
  90. 1 0
      OHSU/sub-0050162/surf/rh.sphere.sub-0050162_T1w.gii
  91. 1 0
      OHSU/sub-0050162/surf/rh.thickness.sub-0050162_T1w
  92. 1 0
      OHSU/sub-0050162/surf/rh.toroGI20mm.sub-0050162_T1w
  93. 1 0
      OHSU/sub-0050162/surf/s12.mesh.thickness.resampled_32k.sub-0050162_T1w.dat
  94. 1 0
      OHSU/sub-0050162/surf/s12.mesh.thickness.resampled_32k.sub-0050162_T1w.gii
  95. 1 0
      OHSU/sub-0050162/surf/s22.mesh.area.resampled_32k.sub-0050162_T1w.dat
  96. 1 0
      OHSU/sub-0050162/surf/s22.mesh.area.resampled_32k.sub-0050162_T1w.gii
  97. 1 0
      OHSU/sub-0050162/surf/s22.mesh.depth.resampled_32k.sub-0050162_T1w.dat
  98. 1 0
      OHSU/sub-0050162/surf/s22.mesh.depth.resampled_32k.sub-0050162_T1w.gii
  99. 1 0
      OHSU/sub-0050162/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050162_T1w.dat
  100. 0 0
      OHSU/sub-0050162/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050162_T1w.gii

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OHSU/sub-0050162/label/catROI_sub-0050162_T1w.mat
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+../../../.git/annex/objects/9P/4Z/MD5E-s61285--c1ddb4f82a609e32ef491f8e66de0da7.mat/MD5E-s61285--c1ddb4f82a609e32ef491f8e66de0da7.mat

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OHSU/sub-0050162/label/catROI_sub-0050162_T1w.xml
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+../../../.git/annex/objects/KP/kK/MD5E-s188961--777bc39dcadd9f6a5116541cb42ffa68.xml/MD5E-s188961--777bc39dcadd9f6a5116541cb42ffa68.xml

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OHSU/sub-0050162/label/catROIs_sub-0050162_T1w.xml
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OHSU/sub-0050162/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050162_T1w.csv
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OHSU/sub-0050162/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050162_T1w.nii.gz
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+../../../.git/annex/objects/zx/wk/MD5E-s151734--714dd0b73607240eb40dadfb97666795.nii.gz/MD5E-s151734--714dd0b73607240eb40dadfb97666795.nii.gz

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OHSU/sub-0050162/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050162_T1w.csv
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OHSU/sub-0050162/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050162_T1w.nii.gz
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+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

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OHSU/sub-0050162/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050162_T1w.csv
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OHSU/sub-0050162/mri/Tian_Subcortex_S2_7T_sub-0050162_T1w.csv
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OHSU/sub-0050162/mri/hammers_sub-0050162_T1w.nii.gz
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