[DATALAD RUNCMD] Compute Olin/sub-0050118

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050118/anat/sub-0050118_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050118"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050118/label/catROI_sub-0050118_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fj/07/MD5E-s61473--ed4f0df9a55ce4777930ba48abeab303.mat/MD5E-s61473--ed4f0df9a55ce4777930ba48abeab303.mat

Olin/sub-0050118/label/catROI_sub-0050118_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9j/m0/MD5E-s188791--b8a054758004bef3157f8216c892f91f.xml/MD5E-s188791--b8a054758004bef3157f8216c892f91f.xml

Olin/sub-0050118/label/catROIs_sub-0050118_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8p/jx/MD5E-s120140--a96313a6bab10232a3cbba75ab272b28.mat/MD5E-s120140--a96313a6bab10232a3cbba75ab272b28.mat

Olin/sub-0050118/label/catROIs_sub-0050118_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8k/62/MD5E-s332103--fc6fd9856775b8bd5b7a2dd204e7e2e5.xml/MD5E-s332103--fc6fd9856775b8bd5b7a2dd204e7e2e5.xml

Olin/sub-0050118/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050118/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jM/WK/MD5E-s203731--60e5ff1ac34dab5158445704ffb8657f.nii.gz/MD5E-s203731--60e5ff1ac34dab5158445704ffb8657f.nii.gz

Olin/sub-0050118/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050118/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/pZ/MD5E-s229812--21c0069dd9712a4c2f84a6129a6dac09.nii.gz/MD5E-s229812--21c0069dd9712a4c2f84a6129a6dac09.nii.gz

Olin/sub-0050118/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050118/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/1Z/MD5E-s296570--e499064a5dc10c318c0b40a3a747ba2c.nii.gz/MD5E-s296570--e499064a5dc10c318c0b40a3a747ba2c.nii.gz

Olin/sub-0050118/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050118/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/pJ/MD5E-s331975--7dd96f4ae00dac6a8beb47bf534ee6ab.nii.gz/MD5E-s331975--7dd96f4ae00dac6a8beb47bf534ee6ab.nii.gz

Olin/sub-0050118/mri/Tian_Subcortex_S2_7T_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050118/mri/Tian_Subcortex_S2_7T_sub-0050118_T1w.nii.gz

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+../../../.git/annex/objects/p9/fz/MD5E-s26450--31465567ee2695c65419a48a4aaf6e08.nii.gz/MD5E-s26450--31465567ee2695c65419a48a4aaf6e08.nii.gz

Olin/sub-0050118/mri/aal3_sub-0050118_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050118/mri/aal3_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/anatomy3_sub-0050118_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050118/mri/anatomy3_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/WK/MD5E-s166428--5087a80b38a0ccac1e3d053c7e82e346.nii.gz/MD5E-s166428--5087a80b38a0ccac1e3d053c7e82e346.nii.gz

Olin/sub-0050118/mri/anon_misub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/PW/MD5E-s5752351--4486f9284fca25cbcd23a3ed2a489da2.nii.gz/MD5E-s5752351--4486f9284fca25cbcd23a3ed2a489da2.nii.gz

Olin/sub-0050118/mri/anon_msub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g9/0q/MD5E-s9879477--815b62e0aafbfe3dcf43c95baf09e375.nii.gz/MD5E-s9879477--815b62e0aafbfe3dcf43c95baf09e375.nii.gz

Olin/sub-0050118/mri/cat_sub-0050118_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w1/xw/MD5E-s119235--724d62827b31f3309c5f8c35cd3397a1.nii.gz/MD5E-s119235--724d62827b31f3309c5f8c35cd3397a1.nii.gz

Olin/sub-0050118/mri/cobra_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050118/mri/cobra_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/hammers_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050118/mri/hammers_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/ibsr_sub-0050118_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050118/mri/ibsr_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/it_sub-0050118_T1w_affine_reorient.mat

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Olin/sub-0050118/mri/it_sub-0050118_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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Olin/sub-0050118/mri/iy_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/julichbrain_sub-0050118_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050118/mri/julichbrain_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/lpba40_sub-0050118_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050118/mri/lpba40_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/m0wp1sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/m0wp2sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/m0wp3sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/mori_sub-0050118_T1w.csv

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Olin/sub-0050118/mri/mori_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/mwp1sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/mwp2sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/mwp3sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/neuromorphometrics_sub-0050118_T1w.csv

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Olin/sub-0050118/mri/neuromorphometrics_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/p0sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/p1sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/p2sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/p3sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/rp1sub-0050118_T1w_affine.nii.gz

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Olin/sub-0050118/mri/rp2sub-0050118_T1w_affine.nii.gz

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Olin/sub-0050118/mri/rp3sub-0050118_T1w_affine.nii.gz

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Olin/sub-0050118/mri/t_sub-0050118_T1w_affine_reorient.mat

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Olin/sub-0050118/mri/t_sub-0050118_T1w_rigid_reorient.mat

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Olin/sub-0050118/mri/thalamus_sub-0050118_T1w.csv

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Olin/sub-0050118/mri/thalamus_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wj_sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wmisub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wmsub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wp0sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wp1sub-0050118_T1w.nii.gz

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Olin/sub-0050118/mri/wp2sub-0050118_T1w.nii.gz

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