[DATALAD RUNCMD] Compute Trinity/sub-0051140

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0051140/anat/sub-0051140_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0051140"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0051140/label/catROI_sub-0051140_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VM/pm/MD5E-s61367--908c89eb9fb75f3b771ed4375c7ff199.mat/MD5E-s61367--908c89eb9fb75f3b771ed4375c7ff199.mat

Trinity/sub-0051140/label/catROI_sub-0051140_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/80/MD5E-s188673--b8297c7018868df1a51cfc87eb06ca85.xml/MD5E-s188673--b8297c7018868df1a51cfc87eb06ca85.xml

Trinity/sub-0051140/label/catROIs_sub-0051140_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xj/mV/MD5E-s120063--c829c97af982429cf9eeddf8e6a4fdac.mat/MD5E-s120063--c829c97af982429cf9eeddf8e6a4fdac.mat

Trinity/sub-0051140/label/catROIs_sub-0051140_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fq/Zz/MD5E-s332113--a402c9b7d7a256e23dfa041e35ad5424.xml/MD5E-s332113--a402c9b7d7a256e23dfa041e35ad5424.xml

Trinity/sub-0051140/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0051140/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4K/mF/MD5E-s178624--03e537f2bd138989b6968b8e0ff24584.nii.gz/MD5E-s178624--03e537f2bd138989b6968b8e0ff24584.nii.gz

Trinity/sub-0051140/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0051140/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0051140/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0051140/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FP/K0/MD5E-s302700--0a3df2e25b7e915d83a2a172860fef74.nii.gz/MD5E-s302700--0a3df2e25b7e915d83a2a172860fef74.nii.gz

Trinity/sub-0051140/mri/Tian_Subcortex_S2_7T_sub-0051140_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/Tian_Subcortex_S2_7T_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WM/3v/MD5E-s23732--fefa4fab151b81512d8ad2540fa924f1.nii.gz/MD5E-s23732--fefa4fab151b81512d8ad2540fa924f1.nii.gz

Trinity/sub-0051140/mri/aal3_sub-0051140_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/aal3_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/anatomy3_sub-0051140_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/anatomy3_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/anon_misub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/anon_msub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/2x/MD5E-s9449012--4c4296ae968b625e7e4b4f1c3734ece2.nii.gz/MD5E-s9449012--4c4296ae968b625e7e4b4f1c3734ece2.nii.gz

Trinity/sub-0051140/mri/cat_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/cobra_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0051140/mri/cobra_sub-0051140_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0051140/mri/hammers_sub-0051140_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0051140/mri/hammers_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/ibsr_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/ibsr_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/it_sub-0051140_T1w_affine_reorient.mat

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Trinity/sub-0051140/mri/it_sub-0051140_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/g7/MD5E-s282--61b1a3d608d14327619bb76e5a245ac4.mat/MD5E-s282--61b1a3d608d14327619bb76e5a245ac4.mat

Trinity/sub-0051140/mri/iy_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/julichbrain_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/julichbrain_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/lpba40_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/lpba40_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/m0wp1sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/m0wp2sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/m0wp3sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/mori_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/mori_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/mwp1sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/mwp2sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/mwp3sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/neuromorphometrics_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/neuromorphometrics_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/p0sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/p1sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/p2sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/p3sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/rp1sub-0051140_T1w_affine.nii.gz

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Trinity/sub-0051140/mri/rp2sub-0051140_T1w_affine.nii.gz

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Trinity/sub-0051140/mri/rp3sub-0051140_T1w_affine.nii.gz

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Trinity/sub-0051140/mri/t_sub-0051140_T1w_affine_reorient.mat

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Trinity/sub-0051140/mri/t_sub-0051140_T1w_rigid_reorient.mat

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Trinity/sub-0051140/mri/thalamus_sub-0051140_T1w.csv

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Trinity/sub-0051140/mri/thalamus_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wj_sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wmisub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wmsub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wp0sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wp1sub-0051140_T1w.nii.gz

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Trinity/sub-0051140/mri/wp2sub-0051140_T1w.nii.gz

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