[DATALAD RUNCMD] Compute CMU_b/sub-0050661

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_b/sub-0050661/anat/sub-0050661_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_b/sub-0050661"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_b/sub-0050661/label/catROI_sub-0050661_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/vW/MD5E-s57633--bf26b070f34775e7bf3099ffd7a1f3e8.mat/MD5E-s57633--bf26b070f34775e7bf3099ffd7a1f3e8.mat

CMU_b/sub-0050661/label/catROI_sub-0050661_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/X8/MD5E-s188868--a63e48cb194a0564ad083fead586da45.xml/MD5E-s188868--a63e48cb194a0564ad083fead586da45.xml

CMU_b/sub-0050661/label/catROIs_sub-0050661_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PX/58/MD5E-s120014--f9d2b77783a2bbc45d35a64b66dacaf7.mat/MD5E-s120014--f9d2b77783a2bbc45d35a64b66dacaf7.mat

CMU_b/sub-0050661/label/catROIs_sub-0050661_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/F6/MD5E-s332165--6725e62884623924c94326b3aeb1ab3b.xml/MD5E-s332165--6725e62884623924c94326b3aeb1ab3b.xml

CMU_b/sub-0050661/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_b/sub-0050661/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/j5/MD5E-s152789--ecb50297fc21e001a2e1c0572de0943f.nii.gz/MD5E-s152789--ecb50297fc21e001a2e1c0572de0943f.nii.gz

CMU_b/sub-0050661/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_b/sub-0050661/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xm/0k/MD5E-s171761--ec0d2e74a1d8b3308602aabfbef923b2.nii.gz/MD5E-s171761--ec0d2e74a1d8b3308602aabfbef923b2.nii.gz

CMU_b/sub-0050661/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_b/sub-0050661/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/pk/MD5E-s227269--3cd243ed3fc44fae3eb88f9ef3653b21.nii.gz/MD5E-s227269--3cd243ed3fc44fae3eb88f9ef3653b21.nii.gz

CMU_b/sub-0050661/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_b/sub-0050661/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xm/fw/MD5E-s253310--95b10add8c4592e604089f1bf56d788b.nii.gz/MD5E-s253310--95b10add8c4592e604089f1bf56d788b.nii.gz

CMU_b/sub-0050661/mri/Tian_Subcortex_S2_7T_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_b/sub-0050661/mri/Tian_Subcortex_S2_7T_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xf/Z8/MD5E-s16902--77c4f9513b06f5a9523824ee66a096b7.nii.gz/MD5E-s16902--77c4f9513b06f5a9523824ee66a096b7.nii.gz

CMU_b/sub-0050661/mri/aal3_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_b/sub-0050661/mri/aal3_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/85/MD5E-s173602--8b62d989a3ee782ac0dfd656386d942d.nii.gz/MD5E-s173602--8b62d989a3ee782ac0dfd656386d942d.nii.gz

CMU_b/sub-0050661/mri/anatomy3_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_b/sub-0050661/mri/anatomy3_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x1/X7/MD5E-s123053--0eabcb5fa988a636c7995ef8ef669a29.nii.gz/MD5E-s123053--0eabcb5fa988a636c7995ef8ef669a29.nii.gz

CMU_b/sub-0050661/mri/anon_misub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WG/QP/MD5E-s6638633--d1f5d1df898a7d0b3c940231f8e33cd7.nii.gz/MD5E-s6638633--d1f5d1df898a7d0b3c940231f8e33cd7.nii.gz

CMU_b/sub-0050661/mri/anon_msub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2j/3w/MD5E-s6857635--d430df7cc6ab200460f9420d8ee417f8.nii.gz/MD5E-s6857635--d430df7cc6ab200460f9420d8ee417f8.nii.gz

CMU_b/sub-0050661/mri/cat_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8k/FV/MD5E-s89912--0b3ab4b7de99b231e4c238fc737175c3.nii.gz/MD5E-s89912--0b3ab4b7de99b231e4c238fc737175c3.nii.gz

CMU_b/sub-0050661/mri/cobra_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_b/sub-0050661/mri/cobra_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kj/16/MD5E-s40721--94022dd3be856a22ae45e3dce912d249.nii.gz/MD5E-s40721--94022dd3be856a22ae45e3dce912d249.nii.gz

CMU_b/sub-0050661/mri/hammers_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_b/sub-0050661/mri/hammers_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/Jq/MD5E-s135226--a29dc2dd76111013cfa1b4b89f36080d.nii.gz/MD5E-s135226--a29dc2dd76111013cfa1b4b89f36080d.nii.gz

CMU_b/sub-0050661/mri/ibsr_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_b/sub-0050661/mri/ibsr_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vM/QK/MD5E-s141791--70b7eeec4b7bcc8e05d019d2c1696fbf.nii.gz/MD5E-s141791--70b7eeec4b7bcc8e05d019d2c1696fbf.nii.gz

CMU_b/sub-0050661/mri/it_sub-0050661_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/7j/MD5E-s280--571610c9b259915b268aa38fbc18ad4b.mat/MD5E-s280--571610c9b259915b268aa38fbc18ad4b.mat

CMU_b/sub-0050661/mri/it_sub-0050661_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/j6/MD5E-s283--da1908762940c816d2e99b0661ad88a6.mat/MD5E-s283--da1908762940c816d2e99b0661ad88a6.mat

CMU_b/sub-0050661/mri/iy_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/zV/MD5E-s40153016--35b95ef9877126a9eea6738824e71522.nii.gz/MD5E-s40153016--35b95ef9877126a9eea6738824e71522.nii.gz

CMU_b/sub-0050661/mri/julichbrain_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_b/sub-0050661/mri/julichbrain_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3X/qx/MD5E-s181637--04985e31143749091c1b0f83ff7f3ece.nii.gz/MD5E-s181637--04985e31143749091c1b0f83ff7f3ece.nii.gz

CMU_b/sub-0050661/mri/lpba40_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_b/sub-0050661/mri/lpba40_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XW/0G/MD5E-s132231--4606eef16856dbf7a473fac93c48304c.nii.gz/MD5E-s132231--4606eef16856dbf7a473fac93c48304c.nii.gz

CMU_b/sub-0050661/mri/m0wp1sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V9/Mj/MD5E-s2580594--6c8b8a4217235575bc07c6cbf267e0e1.nii.gz/MD5E-s2580594--6c8b8a4217235575bc07c6cbf267e0e1.nii.gz

CMU_b/sub-0050661/mri/m0wp2sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mF/kf/MD5E-s2324864--1db6df7d5d4d24b27ed22ec91e62db6d.nii.gz/MD5E-s2324864--1db6df7d5d4d24b27ed22ec91e62db6d.nii.gz

CMU_b/sub-0050661/mri/m0wp3sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/q3/MD5E-s2649194--bbd758a191ef1e843b663cd5707760a7.nii.gz/MD5E-s2649194--bbd758a191ef1e843b663cd5707760a7.nii.gz

CMU_b/sub-0050661/mri/mori_sub-0050661_T1w.csv

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/mori_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wX/vj/MD5E-s157758--24c38a91e4ed61e3064679514657ea88.nii.gz/MD5E-s157758--24c38a91e4ed61e3064679514657ea88.nii.gz

CMU_b/sub-0050661/mri/mwp1sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KJ/m5/MD5E-s2587421--dadbce7a467dce5157daa66e88f537cf.nii.gz/MD5E-s2587421--dadbce7a467dce5157daa66e88f537cf.nii.gz

CMU_b/sub-0050661/mri/mwp2sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/xZ/MD5E-s2329967--8f11ee8939bd65505911961a2456020f.nii.gz/MD5E-s2329967--8f11ee8939bd65505911961a2456020f.nii.gz

CMU_b/sub-0050661/mri/mwp3sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p6/23/MD5E-s2645331--e983e44afe411cbaede01f6f777c0278.nii.gz/MD5E-s2645331--e983e44afe411cbaede01f6f777c0278.nii.gz

CMU_b/sub-0050661/mri/neuromorphometrics_sub-0050661_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_b/sub-0050661/mri/neuromorphometrics_sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/mx/MD5E-s184403--6b9ed8e40bcaee9c484be6fdc5bba8c3.nii.gz/MD5E-s184403--6b9ed8e40bcaee9c484be6fdc5bba8c3.nii.gz

CMU_b/sub-0050661/mri/p0sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4m/63/MD5E-s616978--8beb7dc0e8cc70b5c873eac438766003.nii.gz/MD5E-s616978--8beb7dc0e8cc70b5c873eac438766003.nii.gz

CMU_b/sub-0050661/mri/p1sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/p2sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/p3sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/rp1sub-0050661_T1w_affine.nii.gz

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CMU_b/sub-0050661/mri/rp2sub-0050661_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/JG/MD5E-s309911--82cd03f42fe6561c249799045e62bd49.nii.gz/MD5E-s309911--82cd03f42fe6561c249799045e62bd49.nii.gz

CMU_b/sub-0050661/mri/rp3sub-0050661_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/t_sub-0050661_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4f/kX/MD5E-s284--6985814fb217a67418cbde434c7f1ae6.mat/MD5E-s284--6985814fb217a67418cbde434c7f1ae6.mat

CMU_b/sub-0050661/mri/t_sub-0050661_T1w_rigid_reorient.mat

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CMU_b/sub-0050661/mri/thalamus_sub-0050661_T1w.csv

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CMU_b/sub-0050661/mri/thalamus_sub-0050661_T1w.nii.gz

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CMU_b/sub-0050661/mri/wj_sub-0050661_T1w.nii.gz

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CMU_b/sub-0050661/mri/wmisub-0050661_T1w.nii.gz

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CMU_b/sub-0050661/mri/wmsub-0050661_T1w.nii.gz

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CMU_b/sub-0050661/mri/wp0sub-0050661_T1w.nii.gz

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CMU_b/sub-0050661/mri/wp1sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/wp2sub-0050661_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050661/mri/wp3sub-0050661_T1w.nii.gz

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