[DATALAD RUNCMD] Compute SDSU/sub-0050211

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SDSU/sub-0050211/anat/sub-0050211_T1w.nii.gz"
 ],
 "outputs": [
  "SDSU/sub-0050211"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SDSU/sub-0050211/label/catROI_sub-0050211_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zk/XF/MD5E-s58567--c3ecd798920baf4b3cb86df86d9de2f1.mat/MD5E-s58567--c3ecd798920baf4b3cb86df86d9de2f1.mat

SDSU/sub-0050211/label/catROI_sub-0050211_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3W/58/MD5E-s188808--035e0fe6aac826227ed5d2ddf7c537f7.xml/MD5E-s188808--035e0fe6aac826227ed5d2ddf7c537f7.xml

SDSU/sub-0050211/label/catROIs_sub-0050211_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vM/3M/MD5E-s120159--9467a57fa2c189006b29c136bdf29b56.mat/MD5E-s120159--9467a57fa2c189006b29c136bdf29b56.mat

SDSU/sub-0050211/label/catROIs_sub-0050211_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8q/Gx/MD5E-s332111--b729d00d205c0831456f961e656ef146.xml/MD5E-s332111--b729d00d205c0831456f961e656ef146.xml

SDSU/sub-0050211/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SDSU/sub-0050211/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/Jp/MD5E-s176819--18d1cf14cdde2d51213491cea38e2351.nii.gz/MD5E-s176819--18d1cf14cdde2d51213491cea38e2351.nii.gz

SDSU/sub-0050211/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SDSU/sub-0050211/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K2/Xp/MD5E-s199530--51ec9c6a779efabc5d2da4d0e733680e.nii.gz/MD5E-s199530--51ec9c6a779efabc5d2da4d0e733680e.nii.gz

SDSU/sub-0050211/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SDSU/sub-0050211/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/WM/MD5E-s270869--fb5adcf040c61b7e148ad327c2234a8e.nii.gz/MD5E-s270869--fb5adcf040c61b7e148ad327c2234a8e.nii.gz

SDSU/sub-0050211/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SDSU/sub-0050211/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/jg/MD5E-s302072--fe6e3627706d71b92fd14431bc5046bf.nii.gz/MD5E-s302072--fe6e3627706d71b92fd14431bc5046bf.nii.gz

SDSU/sub-0050211/mri/Tian_Subcortex_S2_7T_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SDSU/sub-0050211/mri/Tian_Subcortex_S2_7T_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pv/MP/MD5E-s25685--7a91394999e288eda6707a928e050a44.nii.gz/MD5E-s25685--7a91394999e288eda6707a928e050a44.nii.gz

SDSU/sub-0050211/mri/aal3_sub-0050211_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050211/mri/aal3_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/QK/MD5E-s202676--932642caf63f4b24e95cfdebb7ca08fe.nii.gz/MD5E-s202676--932642caf63f4b24e95cfdebb7ca08fe.nii.gz

SDSU/sub-0050211/mri/anatomy3_sub-0050211_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050211/mri/anatomy3_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QM/Vx/MD5E-s145418--b2f67b0cc6fee3645d58196cf1247f84.nii.gz/MD5E-s145418--b2f67b0cc6fee3645d58196cf1247f84.nii.gz

SDSU/sub-0050211/mri/anon_misub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/5X/MD5E-s5649566--d9f949c023816fa7e868e93906622dc6.nii.gz/MD5E-s5649566--d9f949c023816fa7e868e93906622dc6.nii.gz

SDSU/sub-0050211/mri/anon_msub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q4/GF/MD5E-s10243395--8406c2f596d06d2082013a36c613185e.nii.gz/MD5E-s10243395--8406c2f596d06d2082013a36c613185e.nii.gz

SDSU/sub-0050211/mri/cat_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/xQ/MD5E-s105332--21cededd5faf7744f2072f2a9415b6b6.nii.gz/MD5E-s105332--21cededd5faf7744f2072f2a9415b6b6.nii.gz

SDSU/sub-0050211/mri/cobra_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SDSU/sub-0050211/mri/cobra_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J3/80/MD5E-s50303--6be0fea88e2b5c9398566bb7ae45cb48.nii.gz/MD5E-s50303--6be0fea88e2b5c9398566bb7ae45cb48.nii.gz

SDSU/sub-0050211/mri/hammers_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SDSU/sub-0050211/mri/hammers_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zZ/vP/MD5E-s155642--9ad6b96d5744d58c314f5c6e842a55aa.nii.gz/MD5E-s155642--9ad6b96d5744d58c314f5c6e842a55aa.nii.gz

SDSU/sub-0050211/mri/ibsr_sub-0050211_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SDSU/sub-0050211/mri/ibsr_sub-0050211_T1w.nii.gz

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+../../../.git/annex/objects/mW/Wx/MD5E-s165037--f0fb397720748a25c0021b7152ea98de.nii.gz/MD5E-s165037--f0fb397720748a25c0021b7152ea98de.nii.gz

SDSU/sub-0050211/mri/it_sub-0050211_T1w_affine_reorient.mat

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+../../../.git/annex/objects/fM/4j/MD5E-s283--8360d12fb7378611f9541f8bca8d8081.mat/MD5E-s283--8360d12fb7378611f9541f8bca8d8081.mat

SDSU/sub-0050211/mri/it_sub-0050211_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/K7/MD5E-s284--dfada14e729c10a573af15935138949f.mat/MD5E-s284--dfada14e729c10a573af15935138949f.mat

SDSU/sub-0050211/mri/iy_sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/julichbrain_sub-0050211_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SDSU/sub-0050211/mri/julichbrain_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050211/mri/lpba40_sub-0050211_T1w.csv

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SDSU/sub-0050211/mri/lpba40_sub-0050211_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050211/mri/m0wp1sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/m0wp2sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/m0wp3sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/mori_sub-0050211_T1w.csv

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SDSU/sub-0050211/mri/mori_sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/mwp1sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/mwp2sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/mwp3sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/neuromorphometrics_sub-0050211_T1w.csv

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SDSU/sub-0050211/mri/neuromorphometrics_sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/p0sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/p1sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/p2sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/p3sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/rp1sub-0050211_T1w_affine.nii.gz

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SDSU/sub-0050211/mri/rp2sub-0050211_T1w_affine.nii.gz

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SDSU/sub-0050211/mri/rp3sub-0050211_T1w_affine.nii.gz

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SDSU/sub-0050211/mri/t_sub-0050211_T1w_affine_reorient.mat

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SDSU/sub-0050211/mri/t_sub-0050211_T1w_rigid_reorient.mat

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SDSU/sub-0050211/mri/thalamus_sub-0050211_T1w.csv

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SDSU/sub-0050211/mri/thalamus_sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wj_sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wmisub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wmsub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wp0sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wp1sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wp2sub-0050211_T1w.nii.gz

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SDSU/sub-0050211/mri/wp3sub-0050211_T1w.nii.gz

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