[DATALAD RUNCMD] Compute CMU_b/sub-0050667

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_b/sub-0050667/anat/sub-0050667_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_b/sub-0050667"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_b/sub-0050667/label/catROI_sub-0050667_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/gZ/MD5E-s57940--fe84c89e690acd96fab30797feea5230.mat/MD5E-s57940--fe84c89e690acd96fab30797feea5230.mat

CMU_b/sub-0050667/label/catROI_sub-0050667_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/7z/MD5E-s188603--4e157139b390b61feb0f55dcfd06f6dc.xml/MD5E-s188603--4e157139b390b61feb0f55dcfd06f6dc.xml

CMU_b/sub-0050667/label/catROIs_sub-0050667_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9F/1X/MD5E-s120140--bc938f7d180deef9a5bf1cf217bb1be0.mat/MD5E-s120140--bc938f7d180deef9a5bf1cf217bb1be0.mat

CMU_b/sub-0050667/label/catROIs_sub-0050667_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/QZ/V0/MD5E-s332164--2b1ee20a1721e4aac4760173b3911ffe.xml/MD5E-s332164--2b1ee20a1721e4aac4760173b3911ffe.xml

CMU_b/sub-0050667/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_b/sub-0050667/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/43/0W/MD5E-s175588--853a02a9a17aebb482901378abb3dce9.nii.gz/MD5E-s175588--853a02a9a17aebb482901378abb3dce9.nii.gz

CMU_b/sub-0050667/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_b/sub-0050667/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G9/56/MD5E-s196021--48625876f113705deb1147ed7bfc5b2d.nii.gz/MD5E-s196021--48625876f113705deb1147ed7bfc5b2d.nii.gz

CMU_b/sub-0050667/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_b/sub-0050667/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/2p/MD5E-s265048--5c6e4f3e88f8ea1074c4faf3a318f3c8.nii.gz/MD5E-s265048--5c6e4f3e88f8ea1074c4faf3a318f3c8.nii.gz

CMU_b/sub-0050667/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_b/sub-0050667/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mx/pK/MD5E-s295517--1497b93a716f254f9a4cf9ab8ea88df0.nii.gz/MD5E-s295517--1497b93a716f254f9a4cf9ab8ea88df0.nii.gz

CMU_b/sub-0050667/mri/Tian_Subcortex_S2_7T_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_b/sub-0050667/mri/Tian_Subcortex_S2_7T_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/5K/MD5E-s25582--0424dbbeae74363e5455230f86820823.nii.gz/MD5E-s25582--0424dbbeae74363e5455230f86820823.nii.gz

CMU_b/sub-0050667/mri/aal3_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_b/sub-0050667/mri/aal3_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QQ/XZ/MD5E-s201371--ca03e0bdd5b1121d749ba2b2a29c7e9a.nii.gz/MD5E-s201371--ca03e0bdd5b1121d749ba2b2a29c7e9a.nii.gz

CMU_b/sub-0050667/mri/anatomy3_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_b/sub-0050667/mri/anatomy3_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xv/J3/MD5E-s143593--81100bd91741cc3e23a7b855e65c33ae.nii.gz/MD5E-s143593--81100bd91741cc3e23a7b855e65c33ae.nii.gz

CMU_b/sub-0050667/mri/anon_misub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wk/P9/MD5E-s9408386--c3e46a92eaeceb43ef6fd46d4cd9655d.nii.gz/MD5E-s9408386--c3e46a92eaeceb43ef6fd46d4cd9655d.nii.gz

CMU_b/sub-0050667/mri/anon_msub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/37/MD5E-s10416036--f565106409ad510443c8f12e32594515.nii.gz/MD5E-s10416036--f565106409ad510443c8f12e32594515.nii.gz

CMU_b/sub-0050667/mri/cat_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xk/MQ/MD5E-s107514--390a643920865604cb3c5650be22fc46.nii.gz/MD5E-s107514--390a643920865604cb3c5650be22fc46.nii.gz

CMU_b/sub-0050667/mri/cobra_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_b/sub-0050667/mri/cobra_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/00/K4/MD5E-s49782--a3d678a3675092be391d940658fbe9c7.nii.gz/MD5E-s49782--a3d678a3675092be391d940658fbe9c7.nii.gz

CMU_b/sub-0050667/mri/hammers_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_b/sub-0050667/mri/hammers_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5w/0V/MD5E-s155746--371fcb5231f30a285b74b2c95a59de27.nii.gz/MD5E-s155746--371fcb5231f30a285b74b2c95a59de27.nii.gz

CMU_b/sub-0050667/mri/ibsr_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_b/sub-0050667/mri/ibsr_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wj/xM/MD5E-s164492--8a3184485e76bee69e8cf6b13d15a593.nii.gz/MD5E-s164492--8a3184485e76bee69e8cf6b13d15a593.nii.gz

CMU_b/sub-0050667/mri/it_sub-0050667_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/30/47/MD5E-s284--59e76644c54965a3237c00e544cd93a0.mat/MD5E-s284--59e76644c54965a3237c00e544cd93a0.mat

CMU_b/sub-0050667/mri/it_sub-0050667_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xm/zk/MD5E-s284--e3b0fffbf883230ed74ef4d482b1d3bb.mat/MD5E-s284--e3b0fffbf883230ed74ef4d482b1d3bb.mat

CMU_b/sub-0050667/mri/iy_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qZ/MF/MD5E-s48393712--a0d7508b275cbaf0ccc7682412c3c251.nii.gz/MD5E-s48393712--a0d7508b275cbaf0ccc7682412c3c251.nii.gz

CMU_b/sub-0050667/mri/julichbrain_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_b/sub-0050667/mri/julichbrain_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/XJ/MD5E-s209997--27959140d9df157c840623634232829d.nii.gz/MD5E-s209997--27959140d9df157c840623634232829d.nii.gz

CMU_b/sub-0050667/mri/lpba40_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_b/sub-0050667/mri/lpba40_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/m0wp1sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/X3/MD5E-s2577952--874463a887e102bf037c913602ba9cd9.nii.gz/MD5E-s2577952--874463a887e102bf037c913602ba9cd9.nii.gz

CMU_b/sub-0050667/mri/m0wp2sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vp/Kj/MD5E-s2345922--af9692cd355ea1d7fcbcb5b421f30b9e.nii.gz/MD5E-s2345922--af9692cd355ea1d7fcbcb5b421f30b9e.nii.gz

CMU_b/sub-0050667/mri/m0wp3sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/z7/MD5E-s2538536--df791eb132d60a781ced0bf13c8bb3d4.nii.gz/MD5E-s2538536--df791eb132d60a781ced0bf13c8bb3d4.nii.gz

CMU_b/sub-0050667/mri/mori_sub-0050667_T1w.csv

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/mori_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/zp/MD5E-s185013--5e20f4ea7f529da7e6ff88f378719ac8.nii.gz/MD5E-s185013--5e20f4ea7f529da7e6ff88f378719ac8.nii.gz

CMU_b/sub-0050667/mri/mwp1sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Z/JJ/MD5E-s2579547--1de68db2ce2b2e1effcf3e585df60994.nii.gz/MD5E-s2579547--1de68db2ce2b2e1effcf3e585df60994.nii.gz

CMU_b/sub-0050667/mri/mwp2sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/wq/MD5E-s2341991--96aba4ae4d34998066235c36a1538d7c.nii.gz/MD5E-s2341991--96aba4ae4d34998066235c36a1538d7c.nii.gz

CMU_b/sub-0050667/mri/mwp3sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/px/MD5E-s2535400--3204e56cfb61528f9be44bb784b1891c.nii.gz/MD5E-s2535400--3204e56cfb61528f9be44bb784b1891c.nii.gz

CMU_b/sub-0050667/mri/neuromorphometrics_sub-0050667_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_b/sub-0050667/mri/neuromorphometrics_sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/p0sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/98/VZ/MD5E-s687387--ec1de9bf7201846d396c13fe3c53bd21.nii.gz/MD5E-s687387--ec1de9bf7201846d396c13fe3c53bd21.nii.gz

CMU_b/sub-0050667/mri/p1sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/p2sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/p3sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/rp1sub-0050667_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m1/vW/MD5E-s442718--f5c19b49ac7a1986dab8394cd26fec44.nii.gz/MD5E-s442718--f5c19b49ac7a1986dab8394cd26fec44.nii.gz

CMU_b/sub-0050667/mri/rp2sub-0050667_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/rp3sub-0050667_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V6/00/MD5E-s287793--6b7e01c805ac0928340fbc96b58cbd61.nii.gz/MD5E-s287793--6b7e01c805ac0928340fbc96b58cbd61.nii.gz

CMU_b/sub-0050667/mri/t_sub-0050667_T1w_affine_reorient.mat

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CMU_b/sub-0050667/mri/t_sub-0050667_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/thalamus_sub-0050667_T1w.csv

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CMU_b/sub-0050667/mri/thalamus_sub-0050667_T1w.nii.gz

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CMU_b/sub-0050667/mri/wj_sub-0050667_T1w.nii.gz

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CMU_b/sub-0050667/mri/wmisub-0050667_T1w.nii.gz

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CMU_b/sub-0050667/mri/wmsub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/wp0sub-0050667_T1w.nii.gz

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CMU_b/sub-0050667/mri/wp1sub-0050667_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050667/mri/wp2sub-0050667_T1w.nii.gz

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