[DATALAD RUNCMD] Compute OHSU/sub-0050155

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050155/anat/sub-0050155_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050155"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050155/label/catROI_sub-0050155_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W9/pW/MD5E-s61393--1100a062ec76c90b036501fdf6fcd00b.mat/MD5E-s61393--1100a062ec76c90b036501fdf6fcd00b.mat

OHSU/sub-0050155/label/catROI_sub-0050155_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pV/j9/MD5E-s188594--dc5b37cff938cda70ea328541db379d6.xml/MD5E-s188594--dc5b37cff938cda70ea328541db379d6.xml

OHSU/sub-0050155/label/catROIs_sub-0050155_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/7X/MD5E-s120053--f90d48844ad470100665f3d276b4b2b1.mat/MD5E-s120053--f90d48844ad470100665f3d276b4b2b1.mat

OHSU/sub-0050155/label/catROIs_sub-0050155_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jM/Gf/MD5E-s332090--8e3126bd7958468a5f3523334ba562ce.xml/MD5E-s332090--8e3126bd7958468a5f3523334ba562ce.xml

OHSU/sub-0050155/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050155/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F1/F9/MD5E-s181491--1e22c85891e64c4c886d57cf64eb2142.nii.gz/MD5E-s181491--1e22c85891e64c4c886d57cf64eb2142.nii.gz

OHSU/sub-0050155/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050155/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pw/22/MD5E-s203680--f6bef35947c8363bcb76fbd22c97dbb8.nii.gz/MD5E-s203680--f6bef35947c8363bcb76fbd22c97dbb8.nii.gz

OHSU/sub-0050155/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050155/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/wV/MD5E-s274189--5fdf3e4b993ca17f104f017c7a2ad375.nii.gz/MD5E-s274189--5fdf3e4b993ca17f104f017c7a2ad375.nii.gz

OHSU/sub-0050155/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050155/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/00/KM/MD5E-s303547--27b8a71f19bfdb7f43bdbb7c64afc08c.nii.gz/MD5E-s303547--27b8a71f19bfdb7f43bdbb7c64afc08c.nii.gz

OHSU/sub-0050155/mri/Tian_Subcortex_S2_7T_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050155/mri/Tian_Subcortex_S2_7T_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xQ/K7/MD5E-s21433--df2933a4a35567f8749e5d41cd2a1390.nii.gz/MD5E-s21433--df2933a4a35567f8749e5d41cd2a1390.nii.gz

OHSU/sub-0050155/mri/aal3_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050155/mri/aal3_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x0/k1/MD5E-s203980--9db4faa1dd92ee2987acd7e60ea782ef.nii.gz/MD5E-s203980--9db4faa1dd92ee2987acd7e60ea782ef.nii.gz

OHSU/sub-0050155/mri/anatomy3_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050155/mri/anatomy3_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X8/46/MD5E-s146755--1023c1bbd9494a7357bfbab0af18e3b1.nii.gz/MD5E-s146755--1023c1bbd9494a7357bfbab0af18e3b1.nii.gz

OHSU/sub-0050155/mri/anon_misub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/27/MD5E-s8348692--7bd5da6837420ee1f3b3b42e603d5e9e.nii.gz/MD5E-s8348692--7bd5da6837420ee1f3b3b42e603d5e9e.nii.gz

OHSU/sub-0050155/mri/anon_msub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mx/wg/MD5E-s9101076--0dc6039840e9be7d831fa2baf93b0359.nii.gz/MD5E-s9101076--0dc6039840e9be7d831fa2baf93b0359.nii.gz

OHSU/sub-0050155/mri/cat_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8j/6j/MD5E-s106773--e711b2f7381436e77eba0d739fe5499c.nii.gz/MD5E-s106773--e711b2f7381436e77eba0d739fe5499c.nii.gz

OHSU/sub-0050155/mri/cobra_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050155/mri/cobra_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MW/j1/MD5E-s47175--7c74dd9187b54d65d3b6985e308e43bb.nii.gz/MD5E-s47175--7c74dd9187b54d65d3b6985e308e43bb.nii.gz

OHSU/sub-0050155/mri/hammers_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050155/mri/hammers_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XW/x7/MD5E-s158820--aa13238fe99b91bd4be69f4bcf5dbabd.nii.gz/MD5E-s158820--aa13238fe99b91bd4be69f4bcf5dbabd.nii.gz

OHSU/sub-0050155/mri/ibsr_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050155/mri/ibsr_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J1/z3/MD5E-s169740--c2ad29eac2d4d8c36b92c4abdf629605.nii.gz/MD5E-s169740--c2ad29eac2d4d8c36b92c4abdf629605.nii.gz

OHSU/sub-0050155/mri/it_sub-0050155_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/k4/MD5E-s284--066675c8659162e2dea386f726915191.mat/MD5E-s284--066675c8659162e2dea386f726915191.mat

OHSU/sub-0050155/mri/it_sub-0050155_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QM/9m/MD5E-s284--afcaadfff29a655a19f90e8372f8736b.mat/MD5E-s284--afcaadfff29a655a19f90e8372f8736b.mat

OHSU/sub-0050155/mri/iy_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zw/mQ/MD5E-s50931345--abffbcc9b9add372d34dba7b05da76ec.nii.gz/MD5E-s50931345--abffbcc9b9add372d34dba7b05da76ec.nii.gz

OHSU/sub-0050155/mri/julichbrain_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050155/mri/julichbrain_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3G/1J/MD5E-s217973--bbddd4750ff26c97f4860d76caf209b2.nii.gz/MD5E-s217973--bbddd4750ff26c97f4860d76caf209b2.nii.gz

OHSU/sub-0050155/mri/lpba40_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050155/mri/lpba40_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k8/08/MD5E-s156292--4328c32f906cf37f60eac0d4ea57c2ad.nii.gz/MD5E-s156292--4328c32f906cf37f60eac0d4ea57c2ad.nii.gz

OHSU/sub-0050155/mri/m0wp1sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5w/ZG/MD5E-s2586699--2e2031e3f3886b090c0f8241e7d2ec53.nii.gz/MD5E-s2586699--2e2031e3f3886b090c0f8241e7d2ec53.nii.gz

OHSU/sub-0050155/mri/m0wp2sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/m0wp3sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gq/x4/MD5E-s2456150--2f7ee29d326856939de0b4cba271f4bc.nii.gz/MD5E-s2456150--2f7ee29d326856939de0b4cba271f4bc.nii.gz

OHSU/sub-0050155/mri/mori_sub-0050155_T1w.csv

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/mori_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fM/3k/MD5E-s188186--ec39ecec635a3271e50aba3d0caa7dd7.nii.gz/MD5E-s188186--ec39ecec635a3271e50aba3d0caa7dd7.nii.gz

OHSU/sub-0050155/mri/mwp1sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/mwp2sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/JJ/MD5E-s2297146--dc26b70ab266a8df427aeddfa123aff9.nii.gz/MD5E-s2297146--dc26b70ab266a8df427aeddfa123aff9.nii.gz

OHSU/sub-0050155/mri/mwp3sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/17/9q/MD5E-s2456114--1e97fd6f308508765f702ca86f55a0a9.nii.gz/MD5E-s2456114--1e97fd6f308508765f702ca86f55a0a9.nii.gz

OHSU/sub-0050155/mri/neuromorphometrics_sub-0050155_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

OHSU/sub-0050155/mri/neuromorphometrics_sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/p0sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1K/j1/MD5E-s705406--a2d3757af792c4df658686d406082ab9.nii.gz/MD5E-s705406--a2d3757af792c4df658686d406082ab9.nii.gz

OHSU/sub-0050155/mri/p1sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/p2sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/p3sub-0050155_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050155/mri/rp1sub-0050155_T1w_affine.nii.gz

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OHSU/sub-0050155/mri/rp2sub-0050155_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/1M/MD5E-s303852--d518b9be3b7f47bc833404d62f449198.nii.gz/MD5E-s303852--d518b9be3b7f47bc833404d62f449198.nii.gz

OHSU/sub-0050155/mri/rp3sub-0050155_T1w_affine.nii.gz

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OHSU/sub-0050155/mri/t_sub-0050155_T1w_affine_reorient.mat

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+../../../.git/annex/objects/x4/K5/MD5E-s283--ceeee9f935404cf67df0edd29e9fe70e.mat/MD5E-s283--ceeee9f935404cf67df0edd29e9fe70e.mat

OHSU/sub-0050155/mri/t_sub-0050155_T1w_rigid_reorient.mat

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OHSU/sub-0050155/mri/thalamus_sub-0050155_T1w.csv

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OHSU/sub-0050155/mri/thalamus_sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wj_sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wmisub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wmsub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wp0sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wp1sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wp2sub-0050155_T1w.nii.gz

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OHSU/sub-0050155/mri/wp3sub-0050155_T1w.nii.gz

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