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ABIDE_cat12.8.1
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[DATALAD RUNCMD] Compute USM/sub-0050478

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050478/anat/sub-0050478_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050478"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 6 miesięcy temu
rodzic
8c4b7e5e26
commit
4140cb29d8
100 zmienionych plików z 99 dodań i 0 usunięć
Widok podzielony Pokaż statystyki zmian
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      USM/sub-0050478/label/catROI_sub-0050478_T1w.mat
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      USM/sub-0050478/label/catROI_sub-0050478_T1w.xml
  3. 1 0
      USM/sub-0050478/label/catROIs_sub-0050478_T1w.mat
  4. 1 0
      USM/sub-0050478/label/catROIs_sub-0050478_T1w.xml
  5. 1 0
      USM/sub-0050478/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050478_T1w.csv
  6. 1 0
      USM/sub-0050478/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050478_T1w.csv
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      USM/sub-0050478/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050478_T1w.csv
  10. 1 0
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      USM/sub-0050478/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050478_T1w.nii.gz
  13. 1 0
      USM/sub-0050478/mri/Tian_Subcortex_S2_7T_sub-0050478_T1w.csv
  14. 1 0
      USM/sub-0050478/mri/Tian_Subcortex_S2_7T_sub-0050478_T1w.nii.gz
  15. 1 0
      USM/sub-0050478/mri/aal3_sub-0050478_T1w.csv
  16. 1 0
      USM/sub-0050478/mri/aal3_sub-0050478_T1w.nii.gz
  17. 1 0
      USM/sub-0050478/mri/anatomy3_sub-0050478_T1w.csv
  18. 1 0
      USM/sub-0050478/mri/anatomy3_sub-0050478_T1w.nii.gz
  19. 1 0
      USM/sub-0050478/mri/anon_misub-0050478_T1w.nii.gz
  20. 1 0
      USM/sub-0050478/mri/anon_msub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/cat_sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/cobra_sub-0050478_T1w.csv
  23. 1 0
      USM/sub-0050478/mri/cobra_sub-0050478_T1w.nii.gz
  24. 1 0
      USM/sub-0050478/mri/hammers_sub-0050478_T1w.csv
  25. 1 0
      USM/sub-0050478/mri/hammers_sub-0050478_T1w.nii.gz
  26. 1 0
      USM/sub-0050478/mri/ibsr_sub-0050478_T1w.csv
  27. 1 0
      USM/sub-0050478/mri/ibsr_sub-0050478_T1w.nii.gz
  28. 1 0
      USM/sub-0050478/mri/it_sub-0050478_T1w_affine_reorient.mat
  29. 1 0
      USM/sub-0050478/mri/it_sub-0050478_T1w_rigid_reorient.mat
  30. 1 0
      USM/sub-0050478/mri/iy_sub-0050478_T1w.nii.gz
  31. 1 0
      USM/sub-0050478/mri/julichbrain_sub-0050478_T1w.csv
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      USM/sub-0050478/mri/julichbrain_sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/lpba40_sub-0050478_T1w.csv
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      USM/sub-0050478/mri/lpba40_sub-0050478_T1w.nii.gz
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  43. 1 0
      USM/sub-0050478/mri/neuromorphometrics_sub-0050478_T1w.csv
  44. 1 0
      USM/sub-0050478/mri/neuromorphometrics_sub-0050478_T1w.nii.gz
  45. 1 0
      USM/sub-0050478/mri/p0sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/p1sub-0050478_T1w.nii.gz
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      USM/sub-0050478/mri/p2sub-0050478_T1w.nii.gz
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  49. 1 0
      USM/sub-0050478/mri/rp1sub-0050478_T1w_affine.nii.gz
  50. 1 0
      USM/sub-0050478/mri/rp2sub-0050478_T1w_affine.nii.gz
  51. 1 0
      USM/sub-0050478/mri/rp3sub-0050478_T1w_affine.nii.gz
  52. 1 0
      USM/sub-0050478/mri/t_sub-0050478_T1w_affine_reorient.mat
  53. 1 0
      USM/sub-0050478/mri/t_sub-0050478_T1w_rigid_reorient.mat
  54. 1 0
      USM/sub-0050478/mri/thalamus_sub-0050478_T1w.csv
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      USM/sub-0050478/mri/thalamus_sub-0050478_T1w.nii.gz
  56. 1 0
      USM/sub-0050478/mri/wj_sub-0050478_T1w.nii.gz
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  63. 1 0
      USM/sub-0050478/mri/y_sub-0050478_T1w.nii.gz
  64. 1 0
      USM/sub-0050478/report/cat_sub-0050478_T1w.mat
  65. 1 0
      USM/sub-0050478/report/cat_sub-0050478_T1w.xml
  66. 1 0
      USM/sub-0050478/report/catlog_sub-0050478_T1w.nii.txt
  67. 1 0
      USM/sub-0050478/report/catreport_sub-0050478_T1w.pdf
  68. 1 0
      USM/sub-0050478/report/catreportj_sub-0050478_T1w.jpg
  69. 1 0
      USM/sub-0050478/surf/lh.area.sub-0050478_T1w
  70. 1 0
      USM/sub-0050478/surf/lh.central.sub-0050478_T1w.gii
  71. 1 0
      USM/sub-0050478/surf/lh.depth.sub-0050478_T1w
  72. 1 0
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  73. 1 0
      USM/sub-0050478/surf/lh.fractaldimension.sub-0050478_T1w
  74. 1 0
      USM/sub-0050478/surf/lh.gmv.sub-0050478_T1w
  75. 1 0
      USM/sub-0050478/surf/lh.gyrification.sub-0050478_T1w
  76. 1 0
      USM/sub-0050478/surf/lh.pbt.sub-0050478_T1w
  77. 1 0
      USM/sub-0050478/surf/lh.sphere.reg.sub-0050478_T1w.gii
  78. 1 0
      USM/sub-0050478/surf/lh.sphere.sub-0050478_T1w.gii
  79. 1 0
      USM/sub-0050478/surf/lh.thickness.sub-0050478_T1w
  80. 1 0
      USM/sub-0050478/surf/lh.toroGI20mm.sub-0050478_T1w
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      USM/sub-0050478/surf/rh.central.sub-0050478_T1w.gii
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      USM/sub-0050478/surf/rh.edgemap32k.sub-0050478_T1w.mat
  85. 1 0
      USM/sub-0050478/surf/rh.fractaldimension.sub-0050478_T1w
  86. 1 0
      USM/sub-0050478/surf/rh.gmv.sub-0050478_T1w
  87. 1 0
      USM/sub-0050478/surf/rh.gyrification.sub-0050478_T1w
  88. 1 0
      USM/sub-0050478/surf/rh.pbt.sub-0050478_T1w
  89. 1 0
      USM/sub-0050478/surf/rh.sphere.reg.sub-0050478_T1w.gii
  90. 1 0
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  91. 1 0
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  92. 1 0
      USM/sub-0050478/surf/rh.toroGI20mm.sub-0050478_T1w
  93. 1 0
      USM/sub-0050478/surf/s12.mesh.thickness.resampled_32k.sub-0050478_T1w.dat
  94. 1 0
      USM/sub-0050478/surf/s12.mesh.thickness.resampled_32k.sub-0050478_T1w.gii
  95. 1 0
      USM/sub-0050478/surf/s22.mesh.area.resampled_32k.sub-0050478_T1w.dat
  96. 1 0
      USM/sub-0050478/surf/s22.mesh.area.resampled_32k.sub-0050478_T1w.gii
  97. 1 0
      USM/sub-0050478/surf/s22.mesh.depth.resampled_32k.sub-0050478_T1w.dat
  98. 1 0
      USM/sub-0050478/surf/s22.mesh.depth.resampled_32k.sub-0050478_T1w.gii
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  100. 0 0
      USM/sub-0050478/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050478_T1w.gii

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USM/sub-0050478/label/catROI_sub-0050478_T1w.mat
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+../../../.git/annex/objects/gV/PM/MD5E-s61405--24e20f4e23d55eb9363756750d333bdd.mat/MD5E-s61405--24e20f4e23d55eb9363756750d333bdd.mat

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USM/sub-0050478/label/catROI_sub-0050478_T1w.xml
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+../../../.git/annex/objects/G7/k8/MD5E-s189081--69cce615a0972eea3c4a32798d3bd5c1.xml/MD5E-s189081--69cce615a0972eea3c4a32798d3bd5c1.xml

+ 1 - 0
USM/sub-0050478/label/catROIs_sub-0050478_T1w.mat
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+../../../.git/annex/objects/3P/qz/MD5E-s119960--652644d2bd1763185c67ce0c750c8a7f.mat/MD5E-s119960--652644d2bd1763185c67ce0c750c8a7f.mat

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USM/sub-0050478/label/catROIs_sub-0050478_T1w.xml
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+../../../.git/annex/objects/z2/x3/MD5E-s332102--25a3d77ba9f66bbfd0cccdcbe97e38dd.xml/MD5E-s332102--25a3d77ba9f66bbfd0cccdcbe97e38dd.xml

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USM/sub-0050478/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050478_T1w.csv
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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

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USM/sub-0050478/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/xg/xx/MD5E-s399012--177fdbe51dbc0c13b6c44d346cd2fe8e.nii.gz/MD5E-s399012--177fdbe51dbc0c13b6c44d346cd2fe8e.nii.gz

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USM/sub-0050478/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050478_T1w.csv
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+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

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USM/sub-0050478/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/Gm/vW/MD5E-s444627--322a1cf436249dd616bf031a88c788a0.nii.gz/MD5E-s444627--322a1cf436249dd616bf031a88c788a0.nii.gz

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USM/sub-0050478/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050478_T1w.csv
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+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

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USM/sub-0050478/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/J4/1g/MD5E-s642381--be280ffa4753c1d345e7bba023462c20.nii.gz/MD5E-s642381--be280ffa4753c1d345e7bba023462c20.nii.gz

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USM/sub-0050478/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050478_T1w.csv
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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

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USM/sub-0050478/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/Wx/VX/MD5E-s707763--26075a347e705b5f7ec00f935970df66.nii.gz/MD5E-s707763--26075a347e705b5f7ec00f935970df66.nii.gz

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USM/sub-0050478/mri/Tian_Subcortex_S2_7T_sub-0050478_T1w.csv
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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

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USM/sub-0050478/mri/Tian_Subcortex_S2_7T_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/Jm/j3/MD5E-s69918--c4a6b13a97fd99b0c67efcc09309db83.nii.gz/MD5E-s69918--c4a6b13a97fd99b0c67efcc09309db83.nii.gz

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USM/sub-0050478/mri/aal3_sub-0050478_T1w.csv
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+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

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USM/sub-0050478/mri/aal3_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/vk/QF/MD5E-s458903--9582e3cf5d2c34956e16ec9448bb64c2.nii.gz/MD5E-s458903--9582e3cf5d2c34956e16ec9448bb64c2.nii.gz

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USM/sub-0050478/mri/anatomy3_sub-0050478_T1w.csv
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+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

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USM/sub-0050478/mri/anatomy3_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/6m/qG/MD5E-s337223--eb06661065c09e66310f70dbdf40afa4.nii.gz/MD5E-s337223--eb06661065c09e66310f70dbdf40afa4.nii.gz

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USM/sub-0050478/mri/anon_misub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/k8/27/MD5E-s17825158--42e5fe67f972dd249d97712e376665dc.nii.gz/MD5E-s17825158--42e5fe67f972dd249d97712e376665dc.nii.gz

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USM/sub-0050478/mri/anon_msub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/zx/6m/MD5E-s32154400--5ab576d50fd9edd637941bc914803512.nii.gz/MD5E-s32154400--5ab576d50fd9edd637941bc914803512.nii.gz

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+../../../.git/annex/objects/z3/fM/MD5E-s248981--65ddd2c4ad5e25fd167c52b176f8f0ef.nii.gz/MD5E-s248981--65ddd2c4ad5e25fd167c52b176f8f0ef.nii.gz

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USM/sub-0050478/mri/cobra_sub-0050478_T1w.csv
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+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

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USM/sub-0050478/mri/cobra_sub-0050478_T1w.nii.gz
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+../../../.git/annex/objects/Kv/12/MD5E-s131874--517b7123da1facdd0768306e7809774a.nii.gz/MD5E-s131874--517b7123da1facdd0768306e7809774a.nii.gz

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USM/sub-0050478/mri/hammers_sub-0050478_T1w.csv
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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

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+../../../.git/annex/objects/Wm/f0/MD5E-s362118--ac46d41429d8534ca6abc712a2130c5e.nii.gz/MD5E-s362118--ac46d41429d8534ca6abc712a2130c5e.nii.gz

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USM/sub-0050478/surf/rh.gyrification.sub-0050478_T1w
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USM/sub-0050478/surf/rh.pbt.sub-0050478_T1w
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USM/sub-0050478/surf/rh.sphere.reg.sub-0050478_T1w.gii
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USM/sub-0050478/surf/rh.sphere.sub-0050478_T1w.gii
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USM/sub-0050478/surf/rh.thickness.sub-0050478_T1w
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USM/sub-0050478/surf/rh.toroGI20mm.sub-0050478_T1w
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USM/sub-0050478/surf/s12.mesh.thickness.resampled_32k.sub-0050478_T1w.dat
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USM/sub-0050478/surf/s12.mesh.thickness.resampled_32k.sub-0050478_T1w.gii
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USM/sub-0050478/surf/s22.mesh.area.resampled_32k.sub-0050478_T1w.dat
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USM/sub-0050478/surf/s22.mesh.area.resampled_32k.sub-0050478_T1w.gii
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USM/sub-0050478/surf/s22.mesh.depth.resampled_32k.sub-0050478_T1w.dat
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USM/sub-0050478/surf/s22.mesh.depth.resampled_32k.sub-0050478_T1w.gii
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USM/sub-0050478/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050478_T1w.dat
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USM/sub-0050478/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050478_T1w.gii
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