[DATALAD RUNCMD] Compute Yale/sub-0050611

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050611/anat/sub-0050611_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050611"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050611/label/catROI_sub-0050611_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/41/6f/MD5E-s57989--931c09f80bcb516730318e16b9d9a5ea.mat/MD5E-s57989--931c09f80bcb516730318e16b9d9a5ea.mat

Yale/sub-0050611/label/catROI_sub-0050611_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/x2/MD5E-s188756--2da41f9851c0334aa4b50ab6734b50e5.xml/MD5E-s188756--2da41f9851c0334aa4b50ab6734b50e5.xml

Yale/sub-0050611/label/catROIs_sub-0050611_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8X/7Q/MD5E-s119836--bcddbcff191cc2a3179f0af383c97e28.mat/MD5E-s119836--bcddbcff191cc2a3179f0af383c97e28.mat

Yale/sub-0050611/label/catROIs_sub-0050611_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/PJ/q3/MD5E-s331592--245e142d4aeee1266bfe4a2e41e4da0b.xml/MD5E-s331592--245e142d4aeee1266bfe4a2e41e4da0b.xml

Yale/sub-0050611/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050611_T1w.csv

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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050611/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050611_T1w.nii.gz

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+../../../.git/annex/objects/5Z/VM/MD5E-s180774--bd6e0afe4d816a687a3c91acb9d2f5e7.nii.gz/MD5E-s180774--bd6e0afe4d816a687a3c91acb9d2f5e7.nii.gz

Yale/sub-0050611/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050611_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050611/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050611_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050611/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050611_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050611/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050611_T1w.nii.gz

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+../../../.git/annex/objects/P9/pz/MD5E-s302464--b1fb9f19990de5503e0f78e0fefe4d72.nii.gz/MD5E-s302464--b1fb9f19990de5503e0f78e0fefe4d72.nii.gz

Yale/sub-0050611/mri/Tian_Subcortex_S2_7T_sub-0050611_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050611/mri/Tian_Subcortex_S2_7T_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/aal3_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/aal3_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/anatomy3_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/anatomy3_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/anon_misub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/anon_msub-0050611_T1w.nii.gz

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+../../../.git/annex/objects/2M/Q8/MD5E-s11579499--f7b9f9564a0ad849c3656ad972fb4e5a.nii.gz/MD5E-s11579499--f7b9f9564a0ad849c3656ad972fb4e5a.nii.gz

Yale/sub-0050611/mri/cat_sub-0050611_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qg/pv/MD5E-s103221--5eca428f9de2114427d538c605c09c5d.nii.gz/MD5E-s103221--5eca428f9de2114427d538c605c09c5d.nii.gz

Yale/sub-0050611/mri/cobra_sub-0050611_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050611/mri/cobra_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/hammers_sub-0050611_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050611/mri/hammers_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/ibsr_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/ibsr_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/it_sub-0050611_T1w_affine_reorient.mat

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+../../../.git/annex/objects/7X/Q4/MD5E-s284--29788f5eeee9e9cd99a770a3df1c2466.mat/MD5E-s284--29788f5eeee9e9cd99a770a3df1c2466.mat

Yale/sub-0050611/mri/it_sub-0050611_T1w_rigid_reorient.mat

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Yale/sub-0050611/mri/iy_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/julichbrain_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/julichbrain_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/lpba40_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/lpba40_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/m0wp1sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/m0wp2sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/m0wp3sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/mori_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/mori_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/mwp1sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/mwp2sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/mwp3sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/neuromorphometrics_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/neuromorphometrics_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/p0sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/p1sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/p2sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/p3sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/rp1sub-0050611_T1w_affine.nii.gz

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Yale/sub-0050611/mri/rp2sub-0050611_T1w_affine.nii.gz

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Yale/sub-0050611/mri/rp3sub-0050611_T1w_affine.nii.gz

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Yale/sub-0050611/mri/t_sub-0050611_T1w_affine_reorient.mat

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Yale/sub-0050611/mri/t_sub-0050611_T1w_rigid_reorient.mat

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Yale/sub-0050611/mri/thalamus_sub-0050611_T1w.csv

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Yale/sub-0050611/mri/thalamus_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wj_sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wmisub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wmsub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wp0sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wp1sub-0050611_T1w.nii.gz

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Yale/sub-0050611/mri/wp2sub-0050611_T1w.nii.gz

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